Hb_000566_070

Information

Type -
Description -
Location Contig566: 61047-62798
Sequence    

Annotation

kegg
ID rcu:RCOM_1079250
description hypothetical protein
nr
ID XP_002514883.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49041: 62073-62250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004223_050 0.1332136916 - - hexokinase [Manihot esculenta]
3 Hb_007017_080 0.1423267903 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_000300_200 0.1510242653 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
5 Hb_001951_130 0.1610064044 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
6 Hb_010810_010 0.162752661 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
7 Hb_000227_190 0.1688419888 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
8 Hb_012258_010 0.1695234826 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
9 Hb_107495_040 0.1718896706 - - PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]
10 Hb_002960_150 0.1719745047 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
11 Hb_001136_070 0.175160184 - - Transmembrane protein TPARL, putative [Ricinus communis]
12 Hb_184134_010 0.1774361432 - - PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
13 Hb_003001_090 0.1788377335 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
14 Hb_000127_140 0.1792781724 - - transporter-related family protein [Populus trichocarpa]
15 Hb_007101_110 0.1802740284 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
16 Hb_012796_020 0.1806391045 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
17 Hb_005695_120 0.180673888 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
18 Hb_000170_200 0.1839076107 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
19 Hb_010577_030 0.1844122884 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
20 Hb_045770_010 0.1846888695 - - ER lumen protein retaining receptor [Populus trichocarpa]

Gene co-expression network

sample Hb_000566_070 Hb_000566_070 Hb_004223_050 Hb_004223_050 Hb_000566_070--Hb_004223_050 Hb_007017_080 Hb_007017_080 Hb_000566_070--Hb_007017_080 Hb_000300_200 Hb_000300_200 Hb_000566_070--Hb_000300_200 Hb_001951_130 Hb_001951_130 Hb_000566_070--Hb_001951_130 Hb_010810_010 Hb_010810_010 Hb_000566_070--Hb_010810_010 Hb_000227_190 Hb_000227_190 Hb_000566_070--Hb_000227_190 Hb_000127_140 Hb_000127_140 Hb_004223_050--Hb_000127_140 Hb_004754_050 Hb_004754_050 Hb_004223_050--Hb_004754_050 Hb_000721_030 Hb_000721_030 Hb_004223_050--Hb_000721_030 Hb_010931_130 Hb_010931_130 Hb_004223_050--Hb_010931_130 Hb_012258_010 Hb_012258_010 Hb_004223_050--Hb_012258_010 Hb_001195_060 Hb_001195_060 Hb_004223_050--Hb_001195_060 Hb_010577_030 Hb_010577_030 Hb_007017_080--Hb_010577_030 Hb_007017_080--Hb_000227_190 Hb_002960_150 Hb_002960_150 Hb_007017_080--Hb_002960_150 Hb_001799_030 Hb_001799_030 Hb_007017_080--Hb_001799_030 Hb_001085_260 Hb_001085_260 Hb_007017_080--Hb_001085_260 Hb_007017_080--Hb_012258_010 Hb_003935_060 Hb_003935_060 Hb_000300_200--Hb_003935_060 Hb_000261_330 Hb_000261_330 Hb_000300_200--Hb_000261_330 Hb_000920_010 Hb_000920_010 Hb_000300_200--Hb_000920_010 Hb_008566_040 Hb_008566_040 Hb_000300_200--Hb_008566_040 Hb_160256_010 Hb_160256_010 Hb_000300_200--Hb_160256_010 Hb_000300_200--Hb_002960_150 Hb_001951_130--Hb_000127_140 Hb_010368_050 Hb_010368_050 Hb_001951_130--Hb_010368_050 Hb_000392_340 Hb_000392_340 Hb_001951_130--Hb_000392_340 Hb_005054_080 Hb_005054_080 Hb_001951_130--Hb_005054_080 Hb_008147_090 Hb_008147_090 Hb_001951_130--Hb_008147_090 Hb_000062_330 Hb_000062_330 Hb_001951_130--Hb_000062_330 Hb_052805_010 Hb_052805_010 Hb_010810_010--Hb_052805_010 Hb_011214_160 Hb_011214_160 Hb_010810_010--Hb_011214_160 Hb_007894_010 Hb_007894_010 Hb_010810_010--Hb_007894_010 Hb_010407_140 Hb_010407_140 Hb_010810_010--Hb_010407_140 Hb_000139_530 Hb_000139_530 Hb_010810_010--Hb_000139_530 Hb_010810_010--Hb_004223_050 Hb_005695_120 Hb_005695_120 Hb_000227_190--Hb_005695_120 Hb_003001_090 Hb_003001_090 Hb_000227_190--Hb_003001_090 Hb_000227_190--Hb_010577_030 Hb_000227_190--Hb_005054_080 Hb_000916_070 Hb_000916_070 Hb_000227_190--Hb_000916_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.23445 2.07446 15.6769 23.614 12.5758 5.29049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1255 6.79856 12.1494 2.33419 5.85692

CAGE analysis