Hb_000566_080

Information

Type -
Description -
Location Contig566: 61263-61448
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49040: 60998-62023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_080 0.0 - - -
2 Hb_028486_060 0.1833021202 - - PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
3 Hb_184134_010 0.1909121219 - - PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
4 Hb_002217_380 0.2013430665 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
5 Hb_010655_020 0.2115469298 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
6 Hb_086022_010 0.2257624551 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
7 Hb_001427_020 0.2269254925 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
8 Hb_004668_110 0.2307762586 - - conserved hypothetical protein [Ricinus communis]
9 Hb_076874_010 0.2356676942 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
10 Hb_051017_010 0.236943304 - - Uncharacterized protein TCM_031047 [Theobroma cacao]
11 Hb_000174_050 0.2371731771 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
12 Hb_004195_230 0.2394111603 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003925_070 0.2507334216 - - ATOZI1, putative [Ricinus communis]
14 Hb_000868_050 0.2528243244 - - RAD51 homolog [Populus nigra]
15 Hb_009189_020 0.2540275661 - - PREDICTED: CASP-like protein 4B4 [Jatropha curcas]
16 Hb_004466_040 0.2556612679 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
17 Hb_000556_150 0.2561662354 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
18 Hb_004374_130 0.2566122327 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
19 Hb_000608_110 0.2577595028 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
20 Hb_006405_030 0.2581111278 - - hypothetical protein VITISV_043238 [Vitis vinifera]

Gene co-expression network

sample Hb_000566_080 Hb_000566_080 Hb_028486_060 Hb_028486_060 Hb_000566_080--Hb_028486_060 Hb_184134_010 Hb_184134_010 Hb_000566_080--Hb_184134_010 Hb_002217_380 Hb_002217_380 Hb_000566_080--Hb_002217_380 Hb_010655_020 Hb_010655_020 Hb_000566_080--Hb_010655_020 Hb_086022_010 Hb_086022_010 Hb_000566_080--Hb_086022_010 Hb_001427_020 Hb_001427_020 Hb_000566_080--Hb_001427_020 Hb_028486_060--Hb_184134_010 Hb_000453_040 Hb_000453_040 Hb_028486_060--Hb_000453_040 Hb_098315_070 Hb_098315_070 Hb_028486_060--Hb_098315_070 Hb_028486_060--Hb_002217_380 Hb_076874_010 Hb_076874_010 Hb_028486_060--Hb_076874_010 Hb_004668_110 Hb_004668_110 Hb_184134_010--Hb_004668_110 Hb_003580_030 Hb_003580_030 Hb_184134_010--Hb_003580_030 Hb_044662_060 Hb_044662_060 Hb_184134_010--Hb_044662_060 Hb_000556_150 Hb_000556_150 Hb_184134_010--Hb_000556_150 Hb_006269_020 Hb_006269_020 Hb_184134_010--Hb_006269_020 Hb_184134_010--Hb_098315_070 Hb_002217_380--Hb_086022_010 Hb_008511_060 Hb_008511_060 Hb_002217_380--Hb_008511_060 Hb_002217_380--Hb_000556_150 Hb_000608_110 Hb_000608_110 Hb_002217_380--Hb_000608_110 Hb_007919_080 Hb_007919_080 Hb_002217_380--Hb_007919_080 Hb_002217_380--Hb_076874_010 Hb_007786_030 Hb_007786_030 Hb_010655_020--Hb_007786_030 Hb_000230_180 Hb_000230_180 Hb_010655_020--Hb_000230_180 Hb_002122_010 Hb_002122_010 Hb_010655_020--Hb_002122_010 Hb_000684_260 Hb_000684_260 Hb_010655_020--Hb_000684_260 Hb_010003_010 Hb_010003_010 Hb_010655_020--Hb_010003_010 Hb_051257_010 Hb_051257_010 Hb_010655_020--Hb_051257_010 Hb_004466_040 Hb_004466_040 Hb_086022_010--Hb_004466_040 Hb_086022_010--Hb_000608_110 Hb_086022_010--Hb_000556_150 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_106411_010 Hb_106411_010 Hb_001427_020--Hb_106411_010 Hb_001427_020--Hb_076874_010 Hb_011671_090 Hb_011671_090 Hb_001427_020--Hb_011671_090 Hb_001427_020--Hb_004668_110 Hb_003925_070 Hb_003925_070 Hb_001427_020--Hb_003925_070 Hb_000025_050 Hb_000025_050 Hb_001427_020--Hb_000025_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1656 14.0688 163.372 225.721 148.251 127.386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.5616 25.7396 21.5799 4.62272 12.4963

CAGE analysis