Hb_000566_090

Information

Type -
Description -
Location Contig566: 69584-71481
Sequence    

Annotation

kegg
ID rcu:RCOM_1079280
description hypothetical protein
nr
ID XP_002514886.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMB7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49043: 69616-71864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_123887_010 0.1239341372 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
3 Hb_174644_010 0.1269280625 - - -
4 Hb_003839_060 0.1271091045 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
5 Hb_000172_260 0.1291333305 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
6 Hb_004125_080 0.1293112002 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
7 Hb_000164_250 0.1296571569 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
8 Hb_003777_100 0.1317286447 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_023536_020 0.1336125403 - - Nicotianamine synthase, putative [Ricinus communis]
10 Hb_103931_010 0.1347239036 - - -
11 Hb_032280_010 0.1348945124 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
12 Hb_005695_050 0.1385004407 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
13 Hb_003442_020 0.142823058 - - ccd1, putative [Ricinus communis]
14 Hb_002374_070 0.1444451643 - - amino acid transporter, putative [Ricinus communis]
15 Hb_001255_030 0.1445165857 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
16 Hb_000433_060 0.1446726531 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
17 Hb_000086_160 0.1456673402 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
18 Hb_002411_070 0.1464105932 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
19 Hb_000628_100 0.1474260323 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
20 Hb_002025_190 0.1482087515 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]

Gene co-expression network

sample Hb_000566_090 Hb_000566_090 Hb_123887_010 Hb_123887_010 Hb_000566_090--Hb_123887_010 Hb_174644_010 Hb_174644_010 Hb_000566_090--Hb_174644_010 Hb_003839_060 Hb_003839_060 Hb_000566_090--Hb_003839_060 Hb_000172_260 Hb_000172_260 Hb_000566_090--Hb_000172_260 Hb_004125_080 Hb_004125_080 Hb_000566_090--Hb_004125_080 Hb_000164_250 Hb_000164_250 Hb_000566_090--Hb_000164_250 Hb_003442_020 Hb_003442_020 Hb_123887_010--Hb_003442_020 Hb_123887_010--Hb_003839_060 Hb_001104_250 Hb_001104_250 Hb_123887_010--Hb_001104_250 Hb_000769_050 Hb_000769_050 Hb_123887_010--Hb_000769_050 Hb_010261_050 Hb_010261_050 Hb_123887_010--Hb_010261_050 Hb_123887_010--Hb_174644_010 Hb_174644_010--Hb_003839_060 Hb_023536_020 Hb_023536_020 Hb_174644_010--Hb_023536_020 Hb_000433_060 Hb_000433_060 Hb_174644_010--Hb_000433_060 Hb_174644_010--Hb_000172_260 Hb_174644_010--Hb_000164_250 Hb_174644_010--Hb_003442_020 Hb_003839_060--Hb_003442_020 Hb_003839_060--Hb_001104_250 Hb_003839_060--Hb_023536_020 Hb_003777_100 Hb_003777_100 Hb_003839_060--Hb_003777_100 Hb_032280_010 Hb_032280_010 Hb_000172_260--Hb_032280_010 Hb_000172_260--Hb_000164_250 Hb_000172_260--Hb_003777_100 Hb_004148_030 Hb_004148_030 Hb_000172_260--Hb_004148_030 Hb_041067_010 Hb_041067_010 Hb_000172_260--Hb_041067_010 Hb_103931_010 Hb_103931_010 Hb_000172_260--Hb_103931_010 Hb_006590_040 Hb_006590_040 Hb_004125_080--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_004125_080--Hb_002374_070 Hb_002411_070 Hb_002411_070 Hb_004125_080--Hb_002411_070 Hb_002116_020 Hb_002116_020 Hb_004125_080--Hb_002116_020 Hb_008200_010 Hb_008200_010 Hb_004125_080--Hb_008200_010 Hb_000373_110 Hb_000373_110 Hb_004125_080--Hb_000373_110 Hb_000164_250--Hb_003777_100 Hb_000164_250--Hb_032280_010 Hb_000164_250--Hb_041067_010 Hb_000164_250--Hb_103931_010 Hb_000164_250--Hb_010261_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.017763 8.21607 1.02051 29.6903 0 0.0186335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0319134 0.534307 0.447445 0.0660464

CAGE analysis