Hb_000566_100

Information

Type -
Description -
Location Contig566: 73315-77888
Sequence    

Annotation

kegg
ID rcu:RCOM_1079290
description sphingosine phosphate lyase, putative (EC:4.1.2.27)
nr
ID KDP26835.1
description hypothetical protein JCGZ_17993 [Jatropha curcas]
swissprot
ID Q9C509
description Sphingosine-1-phosphate lyase OS=Arabidopsis thaliana GN=DPL1 PE=1 SV=1
trembl
ID A0A067K3K9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17993 PE=3 SV=1
Gene Ontology
ID GO:0005737
description sphingosine-1-phosphate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49044: 73330-76424
cDNA
(Sanger)
(ID:Location)		 013_P10.ab1: 73420-76424

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_100 0.0 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
2 Hb_002249_120 0.0934215375 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_018954_020 0.1037661055 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
4 Hb_002681_170 0.1113652422 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
5 Hb_001050_010 0.1172065188 - - Advillin [Gossypium arboreum]
6 Hb_008556_030 0.1189773192 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
7 Hb_002559_040 0.1204222921 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 5 isoform X2 [Jatropha curcas]
8 Hb_000497_230 0.1206258918 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
9 Hb_012404_070 0.1208355201 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
10 Hb_001882_040 0.121208612 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
11 Hb_002000_060 0.1249795932 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
12 Hb_001163_120 0.1253168778 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_001900_120 0.1263194626 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
14 Hb_000179_200 0.1265408009 - - unnamed protein product [Vitis vinifera]
15 Hb_000797_050 0.1272618154 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
16 Hb_001266_140 0.1302159454 - - PREDICTED: protein RER1B [Jatropha curcas]
17 Hb_011609_170 0.1323898118 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
18 Hb_011915_010 0.1332014145 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
19 Hb_030827_030 0.1342394866 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
20 Hb_001085_250 0.1358545204 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000566_100 Hb_000566_100 Hb_002249_120 Hb_002249_120 Hb_000566_100--Hb_002249_120 Hb_018954_020 Hb_018954_020 Hb_000566_100--Hb_018954_020 Hb_002681_170 Hb_002681_170 Hb_000566_100--Hb_002681_170 Hb_001050_010 Hb_001050_010 Hb_000566_100--Hb_001050_010 Hb_008556_030 Hb_008556_030 Hb_000566_100--Hb_008556_030 Hb_002559_040 Hb_002559_040 Hb_000566_100--Hb_002559_040 Hb_002249_120--Hb_002681_170 Hb_002307_350 Hb_002307_350 Hb_002249_120--Hb_002307_350 Hb_017895_020 Hb_017895_020 Hb_002249_120--Hb_017895_020 Hb_003436_050 Hb_003436_050 Hb_002249_120--Hb_003436_050 Hb_005408_020 Hb_005408_020 Hb_002249_120--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_002249_120--Hb_001900_120 Hb_000497_230 Hb_000497_230 Hb_018954_020--Hb_000497_230 Hb_002159_040 Hb_002159_040 Hb_018954_020--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_018954_020--Hb_008406_140 Hb_000197_210 Hb_000197_210 Hb_018954_020--Hb_000197_210 Hb_002235_130 Hb_002235_130 Hb_018954_020--Hb_002235_130 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_002092_100 Hb_002092_100 Hb_002681_170--Hb_002092_100 Hb_002681_170--Hb_008556_030 Hb_002805_060 Hb_002805_060 Hb_002681_170--Hb_002805_060 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_000868_060 Hb_000868_060 Hb_001050_010--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001050_010--Hb_001900_120 Hb_011609_170 Hb_011609_170 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_002836_140 Hb_002836_140 Hb_008556_030--Hb_002836_140 Hb_001418_040 Hb_001418_040 Hb_008556_030--Hb_001418_040 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_008556_030--Hb_000031_280 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030 Hb_002750_050 Hb_002750_050 Hb_002559_040--Hb_002750_050 Hb_000172_540 Hb_000172_540 Hb_002559_040--Hb_000172_540 Hb_013726_080 Hb_013726_080 Hb_002559_040--Hb_013726_080 Hb_000392_370 Hb_000392_370 Hb_002559_040--Hb_000392_370 Hb_002559_040--Hb_002249_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.7475 13.2299 27.694 23.9818 38.7248 41.3355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.518 4.4226 14.4221 7.81488 19.2789

CAGE analysis