Hb_000566_110

Information

Type transcription factor
Description TF Family: WRKY
Location Contig566: 89465-90949
Sequence    

Annotation

kegg
ID pmum:103322097
description probable WRKY transcription factor 75
nr
ID XP_008222197.1
description PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
swissprot
ID Q9FYA2
description Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1
trembl
ID M5XPE9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016153mg PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 75

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49045: 89472-89647 , PASA_asmbl_49046: 90331-90919 , PASA_asmbl_49047: 89972-90919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_110 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
2 Hb_001005_210 0.1203085283 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
3 Hb_000075_030 0.1328208516 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
4 Hb_001004_130 0.1417155768 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
5 Hb_106321_010 0.1485519782 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
6 Hb_009296_060 0.1493481831 - - glutathione s-transferase, putative [Ricinus communis]
7 Hb_000215_420 0.1528563994 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
8 Hb_006916_020 0.1567719417 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
9 Hb_000844_090 0.1573222468 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
10 Hb_000101_370 0.1589416993 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
11 Hb_028927_010 0.1608433052 - - leucine-rich repeat protein, putative [Ricinus communis]
12 Hb_004519_010 0.1621517029 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
13 Hb_032631_080 0.1639799861 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
14 Hb_000832_250 0.1647290855 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
15 Hb_007101_210 0.1670577107 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_005333_210 0.1678800309 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
17 Hb_000343_040 0.1698293956 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
18 Hb_079394_010 0.1704066327 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_000753_180 0.1740695919 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
20 Hb_000484_040 0.1741228556 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000566_110 Hb_000566_110 Hb_001005_210 Hb_001005_210 Hb_000566_110--Hb_001005_210 Hb_000075_030 Hb_000075_030 Hb_000566_110--Hb_000075_030 Hb_001004_130 Hb_001004_130 Hb_000566_110--Hb_001004_130 Hb_106321_010 Hb_106321_010 Hb_000566_110--Hb_106321_010 Hb_009296_060 Hb_009296_060 Hb_000566_110--Hb_009296_060 Hb_000215_420 Hb_000215_420 Hb_000566_110--Hb_000215_420 Hb_001005_210--Hb_000075_030 Hb_032631_080 Hb_032631_080 Hb_001005_210--Hb_032631_080 Hb_001005_210--Hb_001004_130 Hb_000484_040 Hb_000484_040 Hb_001005_210--Hb_000484_040 Hb_000844_090 Hb_000844_090 Hb_001005_210--Hb_000844_090 Hb_001691_060 Hb_001691_060 Hb_001005_210--Hb_001691_060 Hb_000075_030--Hb_032631_080 Hb_000075_030--Hb_001691_060 Hb_002218_040 Hb_002218_040 Hb_000075_030--Hb_002218_040 Hb_000917_330 Hb_000917_330 Hb_000075_030--Hb_000917_330 Hb_001922_010 Hb_001922_010 Hb_000075_030--Hb_001922_010 Hb_001004_130--Hb_000844_090 Hb_008376_020 Hb_008376_020 Hb_001004_130--Hb_008376_020 Hb_006573_250 Hb_006573_250 Hb_001004_130--Hb_006573_250 Hb_079394_010 Hb_079394_010 Hb_001004_130--Hb_079394_010 Hb_001300_140 Hb_001300_140 Hb_001004_130--Hb_001300_140 Hb_005168_030 Hb_005168_030 Hb_106321_010--Hb_005168_030 Hb_123560_020 Hb_123560_020 Hb_106321_010--Hb_123560_020 Hb_106321_010--Hb_000215_420 Hb_000705_090 Hb_000705_090 Hb_106321_010--Hb_000705_090 Hb_011440_010 Hb_011440_010 Hb_106321_010--Hb_011440_010 Hb_002003_030 Hb_002003_030 Hb_106321_010--Hb_002003_030 Hb_000343_040 Hb_000343_040 Hb_009296_060--Hb_000343_040 Hb_000753_180 Hb_000753_180 Hb_009296_060--Hb_000753_180 Hb_001439_040 Hb_001439_040 Hb_009296_060--Hb_001439_040 Hb_000699_050 Hb_000699_050 Hb_009296_060--Hb_000699_050 Hb_005333_210 Hb_005333_210 Hb_009296_060--Hb_005333_210 Hb_009296_060--Hb_011440_010 Hb_000101_370 Hb_000101_370 Hb_000215_420--Hb_000101_370 Hb_004519_010 Hb_004519_010 Hb_000215_420--Hb_004519_010 Hb_000705_100 Hb_000705_100 Hb_000215_420--Hb_000705_100 Hb_000215_420--Hb_000705_090 Hb_001019_210 Hb_001019_210 Hb_000215_420--Hb_001019_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.394903 5.56691 2.08016 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.180326 0.330881 0 13.5455 2.29617

CAGE analysis