Hb_000566_130

Information

Type -
Description -
Location Contig566: 102688-111754
Sequence    

Annotation

kegg
ID rcu:RCOM_1079410
description DNA primase large subunit, putative
nr
ID XP_012085716.1
description PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
swissprot
ID Q84WJ2
description Probable DNA primase large subunit OS=Arabidopsis thaliana GN=At1g67320 PE=2 SV=2
trembl
ID A0A067JSH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17990 PE=4 SV=1
Gene Ontology
ID GO:0003896
description probable dna primase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49052: 103110-111829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_130 0.0 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
2 Hb_093458_020 0.1043452976 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
3 Hb_000077_110 0.1087499017 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
4 Hb_004920_050 0.1361054484 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
5 Hb_000307_220 0.1370982985 - - oxidoreductase family protein [Populus trichocarpa]
6 Hb_000960_090 0.138910854 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002284_260 0.1465052398 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
8 Hb_000288_090 0.1507164582 - - unnamed protein product [Vitis vinifera]
9 Hb_004968_040 0.158689003 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
10 Hb_011485_030 0.161927319 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
11 Hb_000934_150 0.1629667668 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
12 Hb_000003_060 0.1630766958 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
13 Hb_000181_270 0.1641509035 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000483_080 0.1680704596 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
15 Hb_000260_650 0.1728656052 - - PREDICTED: protein PFC0760c [Jatropha curcas]
16 Hb_001080_050 0.1730669053 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
17 Hb_002871_130 0.1734944614 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
18 Hb_002540_070 0.1762863032 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
19 Hb_006970_130 0.1768456964 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
20 Hb_000237_020 0.1807781371 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]

Gene co-expression network

sample Hb_000566_130 Hb_000566_130 Hb_093458_020 Hb_093458_020 Hb_000566_130--Hb_093458_020 Hb_000077_110 Hb_000077_110 Hb_000566_130--Hb_000077_110 Hb_004920_050 Hb_004920_050 Hb_000566_130--Hb_004920_050 Hb_000307_220 Hb_000307_220 Hb_000566_130--Hb_000307_220 Hb_000960_090 Hb_000960_090 Hb_000566_130--Hb_000960_090 Hb_002284_260 Hb_002284_260 Hb_000566_130--Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_002871_130 Hb_002871_130 Hb_093458_020--Hb_002871_130 Hb_000003_060 Hb_000003_060 Hb_093458_020--Hb_000003_060 Hb_093458_020--Hb_000077_110 Hb_004968_040 Hb_004968_040 Hb_093458_020--Hb_004968_040 Hb_000483_080 Hb_000483_080 Hb_000077_110--Hb_000483_080 Hb_000077_110--Hb_000307_220 Hb_000077_110--Hb_004920_050 Hb_000077_110--Hb_002284_260 Hb_000181_270 Hb_000181_270 Hb_004920_050--Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_004920_050--Hb_011485_030 Hb_000890_020 Hb_000890_020 Hb_004920_050--Hb_000890_020 Hb_002518_200 Hb_002518_200 Hb_004920_050--Hb_002518_200 Hb_000237_020 Hb_000237_020 Hb_000307_220--Hb_000237_020 Hb_172706_020 Hb_172706_020 Hb_000307_220--Hb_172706_020 Hb_000581_030 Hb_000581_030 Hb_000307_220--Hb_000581_030 Hb_002518_090 Hb_002518_090 Hb_000307_220--Hb_002518_090 Hb_000260_650 Hb_000260_650 Hb_000960_090--Hb_000260_650 Hb_000288_090 Hb_000288_090 Hb_000960_090--Hb_000288_090 Hb_000960_090--Hb_000077_110 Hb_006970_130 Hb_006970_130 Hb_000960_090--Hb_006970_130 Hb_000960_090--Hb_093458_020 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_004007_130 Hb_004007_130 Hb_002284_260--Hb_004007_130 Hb_002284_260--Hb_002871_130 Hb_003360_010 Hb_003360_010 Hb_002284_260--Hb_003360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.440991 0.493018 7.26151 4.31938 0.607754 0.649741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.159825 0.653834 0.23605 2.45997 0.630778

CAGE analysis