Hb_000566_140

Information

Type transcription factor
Description TF Family: SBP
Location Contig566: 113899-117739
Sequence    

Annotation

kegg
ID rcu:RCOM_1079430
description hypothetical protein
nr
ID XP_012085714.1
description PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
swissprot
ID Q6YZE8
description Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1
trembl
ID B9RMC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079430 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49053: 116662-117243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_140 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
2 Hb_001348_140 0.1131900145 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002025_140 0.12223355 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_004724_430 0.1225582977 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
5 Hb_000565_020 0.1247184266 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
6 Hb_000732_020 0.1248238427 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
7 Hb_000165_130 0.1291968203 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
8 Hb_000640_210 0.133097382 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
9 Hb_113216_010 0.1348233404 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
10 Hb_002955_010 0.1351703873 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
11 Hb_002837_070 0.1368505383 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
12 Hb_000322_170 0.1372071043 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
13 Hb_005028_010 0.1399603098 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
14 Hb_000363_340 0.1403514355 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
15 Hb_000256_270 0.1406600873 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
16 Hb_000211_090 0.1407535779 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
17 Hb_001140_080 0.1410913418 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
18 Hb_002405_020 0.1414336196 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
19 Hb_009615_110 0.1417085878 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
20 Hb_012760_200 0.1430849836 - - protein phsophatase-2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000566_140 Hb_000566_140 Hb_001348_140 Hb_001348_140 Hb_000566_140--Hb_001348_140 Hb_002025_140 Hb_002025_140 Hb_000566_140--Hb_002025_140 Hb_004724_430 Hb_004724_430 Hb_000566_140--Hb_004724_430 Hb_000565_020 Hb_000565_020 Hb_000566_140--Hb_000565_020 Hb_000732_020 Hb_000732_020 Hb_000566_140--Hb_000732_020 Hb_000165_130 Hb_000165_130 Hb_000566_140--Hb_000165_130 Hb_000640_210 Hb_000640_210 Hb_001348_140--Hb_000640_210 Hb_000500_290 Hb_000500_290 Hb_001348_140--Hb_000500_290 Hb_005028_010 Hb_005028_010 Hb_001348_140--Hb_005028_010 Hb_000264_060 Hb_000264_060 Hb_001348_140--Hb_000264_060 Hb_002728_020 Hb_002728_020 Hb_001348_140--Hb_002728_020 Hb_009615_110 Hb_009615_110 Hb_001348_140--Hb_009615_110 Hb_000573_040 Hb_000573_040 Hb_002025_140--Hb_000573_040 Hb_004531_090 Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_001956_120 Hb_001956_120 Hb_004724_430--Hb_001956_120 Hb_011537_040 Hb_011537_040 Hb_004724_430--Hb_011537_040 Hb_000347_080 Hb_000347_080 Hb_004724_430--Hb_000347_080 Hb_004724_430--Hb_000165_130 Hb_012977_010 Hb_012977_010 Hb_004724_430--Hb_012977_010 Hb_000176_110 Hb_000176_110 Hb_004724_430--Hb_000176_110 Hb_077219_010 Hb_077219_010 Hb_000565_020--Hb_077219_010 Hb_113216_010 Hb_113216_010 Hb_000565_020--Hb_113216_010 Hb_012807_120 Hb_012807_120 Hb_000565_020--Hb_012807_120 Hb_002837_070 Hb_002837_070 Hb_000565_020--Hb_002837_070 Hb_098315_100 Hb_098315_100 Hb_000565_020--Hb_098315_100 Hb_001140_080 Hb_001140_080 Hb_000565_020--Hb_001140_080 Hb_002955_010 Hb_002955_010 Hb_000732_020--Hb_002955_010 Hb_000732_020--Hb_113216_010 Hb_001582_030 Hb_001582_030 Hb_000732_020--Hb_001582_030 Hb_002986_050 Hb_002986_050 Hb_000732_020--Hb_002986_050 Hb_000322_170 Hb_000322_170 Hb_000732_020--Hb_000322_170 Hb_000270_450 Hb_000270_450 Hb_000732_020--Hb_000270_450 Hb_000849_100 Hb_000849_100 Hb_000165_130--Hb_000849_100 Hb_000134_360 Hb_000134_360 Hb_000165_130--Hb_000134_360 Hb_001969_040 Hb_001969_040 Hb_000165_130--Hb_001969_040 Hb_002493_090 Hb_002493_090 Hb_000165_130--Hb_002493_090 Hb_000165_130--Hb_000732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2237 6.62736 1.99632 5.05738 25.5879 22.6677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9139 3.22076 3.01161 1.80887 0.242581

CAGE analysis