Hb_000566_170

Information

Type transcription factor
Description TF Family: MIKC
Location Contig566: 139727-149052
Sequence    

Annotation

kegg
ID csv:101216798
description agamous-like MADS-box protein AGL9 homolog
nr
ID XP_012085713.1
description PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
swissprot
ID Q03489
description Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2
trembl
ID A0A061EBY6
description K-box region and MADS-box transcription factor family protein isoform 1 OS=Theobroma cacao GN=TCM_008703 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl9 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49054: 139637-139798 , PASA_asmbl_49055: 139799-145881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_170 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
2 Hb_000510_210 0.0178274775 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
3 Hb_106728_020 0.0688180363 - - cytochrome P450, putative [Ricinus communis]
4 Hb_004631_030 0.0796026952 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
5 Hb_179118_010 0.1054514829 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
6 Hb_012516_030 0.1056097915 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
7 Hb_011206_050 0.1147617716 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
8 Hb_000956_060 0.1192505927 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
9 Hb_000297_220 0.1316560215 - - SAUR family protein [Theobroma cacao]
10 Hb_005144_100 0.1353068432 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
11 Hb_004590_010 0.1366300624 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
12 Hb_004218_220 0.1403832735 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_000975_130 0.1410917906 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
14 Hb_012395_150 0.1430773006 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
15 Hb_002894_040 0.14618866 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001369_530 0.1465601205 - - 21 kDa protein precursor, putative [Ricinus communis]
17 Hb_002054_090 0.1468713618 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
18 Hb_148914_020 0.1479716225 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
19 Hb_000002_230 0.1500864528 - - RING/U-box superfamily protein [Theobroma cacao]
20 Hb_000270_550 0.1548688407 - - -

Gene co-expression network

sample Hb_000566_170 Hb_000566_170 Hb_000510_210 Hb_000510_210 Hb_000566_170--Hb_000510_210 Hb_106728_020 Hb_106728_020 Hb_000566_170--Hb_106728_020 Hb_004631_030 Hb_004631_030 Hb_000566_170--Hb_004631_030 Hb_179118_010 Hb_179118_010 Hb_000566_170--Hb_179118_010 Hb_012516_030 Hb_012516_030 Hb_000566_170--Hb_012516_030 Hb_011206_050 Hb_011206_050 Hb_000566_170--Hb_011206_050 Hb_000510_210--Hb_106728_020 Hb_000510_210--Hb_004631_030 Hb_000510_210--Hb_179118_010 Hb_000510_210--Hb_012516_030 Hb_000510_210--Hb_011206_050 Hb_106728_020--Hb_179118_010 Hb_004590_010 Hb_004590_010 Hb_106728_020--Hb_004590_010 Hb_148914_020 Hb_148914_020 Hb_106728_020--Hb_148914_020 Hb_005900_020 Hb_005900_020 Hb_106728_020--Hb_005900_020 Hb_000297_220 Hb_000297_220 Hb_004631_030--Hb_000297_220 Hb_004631_030--Hb_012516_030 Hb_000956_060 Hb_000956_060 Hb_004631_030--Hb_000956_060 Hb_002054_090 Hb_002054_090 Hb_004631_030--Hb_002054_090 Hb_179118_010--Hb_004590_010 Hb_012395_150 Hb_012395_150 Hb_179118_010--Hb_012395_150 Hb_012879_010 Hb_012879_010 Hb_179118_010--Hb_012879_010 Hb_179118_010--Hb_005900_020 Hb_012516_030--Hb_000297_220 Hb_012516_030--Hb_000956_060 Hb_000975_130 Hb_000975_130 Hb_012516_030--Hb_000975_130 Hb_002044_110 Hb_002044_110 Hb_011206_050--Hb_002044_110 Hb_004218_220 Hb_004218_220 Hb_011206_050--Hb_004218_220 Hb_011206_050--Hb_000975_130 Hb_011206_050--Hb_000956_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0472936 0.0186717 0.11644 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0512721 0

CAGE analysis