Hb_000566_180

Information

Type transcription factor
Description TF Family: M-type
Location Contig566: 151507-152822
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16840g
description hypothetical protein
nr
ID XP_012085899.1
description PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
swissprot
ID Q12224
description Transcription factor RLM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RLM1 PE=1 SV=1
trembl
ID B9GZN5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16840g PE=4 SV=2
Gene Ontology
ID GO:0005634
description flowering locus c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49056: 151427-152039 , PASA_asmbl_49058: 151491-184388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_180 0.0 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
2 Hb_005271_230 0.1732906062 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
3 Hb_057796_010 0.1956146545 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
4 Hb_001404_080 0.202197584 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006274_040 0.2131712902 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
6 Hb_012490_110 0.2138798087 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
7 Hb_050034_010 0.2195935346 - - PREDICTED: cullin-1 [Jatropha curcas]
8 Hb_000684_310 0.2204792421 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
9 Hb_007456_020 0.2223258091 - - unknown [Lotus japonicus]
10 Hb_086765_010 0.2242150681 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
11 Hb_000366_020 0.2247747401 - - -
12 Hb_001894_070 0.2299402937 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
13 Hb_002611_030 0.2335035037 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
14 Hb_009674_010 0.2348660157 - - AAEL007687-PA [Aedes aegypti]
15 Hb_048702_010 0.2358094268 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
16 Hb_001148_080 0.2404074583 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
17 Hb_026740_020 0.2411193627 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_012194_060 0.2420308633 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
19 Hb_059741_010 0.2420456149 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
20 Hb_007153_050 0.2437723297 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000566_180 Hb_000566_180 Hb_005271_230 Hb_005271_230 Hb_000566_180--Hb_005271_230 Hb_057796_010 Hb_057796_010 Hb_000566_180--Hb_057796_010 Hb_001404_080 Hb_001404_080 Hb_000566_180--Hb_001404_080 Hb_006274_040 Hb_006274_040 Hb_000566_180--Hb_006274_040 Hb_012490_110 Hb_012490_110 Hb_000566_180--Hb_012490_110 Hb_050034_010 Hb_050034_010 Hb_000566_180--Hb_050034_010 Hb_006422_030 Hb_006422_030 Hb_005271_230--Hb_006422_030 Hb_005271_230--Hb_050034_010 Hb_060391_010 Hb_060391_010 Hb_005271_230--Hb_060391_010 Hb_006910_050 Hb_006910_050 Hb_005271_230--Hb_006910_050 Hb_002611_030 Hb_002611_030 Hb_005271_230--Hb_002611_030 Hb_000920_290 Hb_000920_290 Hb_057796_010--Hb_000920_290 Hb_003053_050 Hb_003053_050 Hb_057796_010--Hb_003053_050 Hb_057796_010--Hb_001404_080 Hb_011828_010 Hb_011828_010 Hb_057796_010--Hb_011828_010 Hb_000473_120 Hb_000473_120 Hb_057796_010--Hb_000473_120 Hb_000922_060 Hb_000922_060 Hb_057796_010--Hb_000922_060 Hb_001140_170 Hb_001140_170 Hb_001404_080--Hb_001140_170 Hb_001195_090 Hb_001195_090 Hb_001404_080--Hb_001195_090 Hb_001404_080--Hb_011828_010 Hb_005489_150 Hb_005489_150 Hb_001404_080--Hb_005489_150 Hb_001404_080--Hb_000473_120 Hb_002200_040 Hb_002200_040 Hb_006274_040--Hb_002200_040 Hb_008447_030 Hb_008447_030 Hb_006274_040--Hb_008447_030 Hb_142328_010 Hb_142328_010 Hb_006274_040--Hb_142328_010 Hb_002079_050 Hb_002079_050 Hb_006274_040--Hb_002079_050 Hb_000586_030 Hb_000586_030 Hb_006274_040--Hb_000586_030 Hb_000168_010 Hb_000168_010 Hb_006274_040--Hb_000168_010 Hb_038862_010 Hb_038862_010 Hb_012490_110--Hb_038862_010 Hb_001050_020 Hb_001050_020 Hb_012490_110--Hb_001050_020 Hb_004878_010 Hb_004878_010 Hb_012490_110--Hb_004878_010 Hb_002636_040 Hb_002636_040 Hb_012490_110--Hb_002636_040 Hb_002559_030 Hb_002559_030 Hb_012490_110--Hb_002559_030 Hb_007456_020 Hb_007456_020 Hb_050034_010--Hb_007456_020 Hb_102591_010 Hb_102591_010 Hb_050034_010--Hb_102591_010 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_165402_010 Hb_165402_010 Hb_050034_010--Hb_165402_010 Hb_050034_010--Hb_000168_010 Hb_050034_010--Hb_060391_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16015 11.6079 3.96772 33.8122 1.40845 23.8125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99356 0.674669 7.92835 9.27384 23.726

CAGE analysis