Hb_000566_190

Information

Type -
Description -
Location Contig566: 180693-184433
Sequence    

Annotation

kegg
ID rcu:RCOM_1079660
description hypothetical protein
nr
ID CBI27677.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9RMC5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49057: 179585-179956 , PASA_asmbl_49058: 151491-184388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_190 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006414_020 0.1264312717 transcription factor TF Family: MYB -
3 Hb_002154_020 0.1356719578 - - protein with unknown function [Ricinus communis]
4 Hb_000448_060 0.1459669905 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
5 Hb_000107_440 0.1478659122 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
6 Hb_001248_110 0.1521015299 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
7 Hb_012787_040 0.1530057987 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
8 Hb_001489_120 0.1538507601 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
9 Hb_000803_060 0.1543943799 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
10 Hb_001662_170 0.1549356231 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
11 Hb_000649_300 0.1560228863 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
12 Hb_003752_120 0.1572133449 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
13 Hb_004032_310 0.1577049206 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
14 Hb_002915_070 0.1591667253 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
15 Hb_004166_010 0.1627691452 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
16 Hb_002874_170 0.1668366109 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
17 Hb_005496_160 0.1670521285 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
18 Hb_001863_450 0.1671832942 - - cryptochrome 1.2 [Populus tremula]
19 Hb_004466_070 0.1675001354 - - hypothetical protein RCOM_1447500 [Ricinus communis]
20 Hb_002534_050 0.1717597914 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]

Gene co-expression network

sample Hb_000566_190 Hb_000566_190 Hb_006414_020 Hb_006414_020 Hb_000566_190--Hb_006414_020 Hb_002154_020 Hb_002154_020 Hb_000566_190--Hb_002154_020 Hb_000448_060 Hb_000448_060 Hb_000566_190--Hb_000448_060 Hb_000107_440 Hb_000107_440 Hb_000566_190--Hb_000107_440 Hb_001248_110 Hb_001248_110 Hb_000566_190--Hb_001248_110 Hb_012787_040 Hb_012787_040 Hb_000566_190--Hb_012787_040 Hb_000803_060 Hb_000803_060 Hb_006414_020--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_006414_020--Hb_001489_120 Hb_006414_020--Hb_012787_040 Hb_011360_090 Hb_011360_090 Hb_006414_020--Hb_011360_090 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_001258_150 Hb_001258_150 Hb_006414_020--Hb_001258_150 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_004032_310 Hb_004032_310 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_000448_060--Hb_004032_310 Hb_002915_070 Hb_002915_070 Hb_000448_060--Hb_002915_070 Hb_000062_080 Hb_000062_080 Hb_000448_060--Hb_000062_080 Hb_000448_060--Hb_002154_020 Hb_001865_060 Hb_001865_060 Hb_000448_060--Hb_001865_060 Hb_000805_230 Hb_000805_230 Hb_000448_060--Hb_000805_230 Hb_000038_040 Hb_000038_040 Hb_000107_440--Hb_000038_040 Hb_000107_440--Hb_000803_060 Hb_006846_020 Hb_006846_020 Hb_000107_440--Hb_006846_020 Hb_011716_050 Hb_011716_050 Hb_000107_440--Hb_011716_050 Hb_000107_440--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_000107_440--Hb_007007_080 Hb_004466_070 Hb_004466_070 Hb_001248_110--Hb_004466_070 Hb_000544_020 Hb_000544_020 Hb_001248_110--Hb_000544_020 Hb_001608_030 Hb_001608_030 Hb_001248_110--Hb_001608_030 Hb_042553_010 Hb_042553_010 Hb_001248_110--Hb_042553_010 Hb_158696_010 Hb_158696_010 Hb_001248_110--Hb_158696_010 Hb_003752_120 Hb_003752_120 Hb_012787_040--Hb_003752_120 Hb_012787_040--Hb_000803_060 Hb_001662_170 Hb_001662_170 Hb_012787_040--Hb_001662_170 Hb_012787_040--Hb_011360_090 Hb_012787_040--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_012787_040--Hb_004106_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08095 78.9929 22.367 15.4667 2.53489 15.6577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9924 2.36809 4.96793 16.0654 13.118

CAGE analysis