Hb_000566_200

Information

Type -
Description -
Location Contig566: 195992-198829
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13670g
description POPTRDRAFT_708760; hypothetical protein
nr
ID XP_012085708.1
description PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17984 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49060: 195956-198696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_200 0.0 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
2 Hb_010485_020 0.0882236768 - - PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]
3 Hb_002311_180 0.088735943 - - drought-responsive family protein [Populus trichocarpa]
4 Hb_000915_180 0.096084702 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
5 Hb_000340_420 0.0974625745 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
6 Hb_007416_300 0.0986432534 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
7 Hb_002876_320 0.0990291771 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
8 Hb_033720_010 0.0992967533 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
9 Hb_033642_030 0.0996755251 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
10 Hb_003893_030 0.0998474478 - - Protein yrdA, putative [Ricinus communis]
11 Hb_000661_290 0.10137025 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
12 Hb_135831_010 0.1016466159 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
13 Hb_000000_270 0.1017173766 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
14 Hb_000760_020 0.1020199725 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
15 Hb_001619_150 0.1051784407 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
16 Hb_003813_040 0.1055450466 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
17 Hb_152175_010 0.105598387 - - Protein grpE, putative [Ricinus communis]
18 Hb_000200_380 0.1056487965 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
19 Hb_019280_030 0.1057278131 - - -
20 Hb_000053_110 0.1060129716 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000566_200 Hb_000566_200 Hb_010485_020 Hb_010485_020 Hb_000566_200--Hb_010485_020 Hb_002311_180 Hb_002311_180 Hb_000566_200--Hb_002311_180 Hb_000915_180 Hb_000915_180 Hb_000566_200--Hb_000915_180 Hb_000340_420 Hb_000340_420 Hb_000566_200--Hb_000340_420 Hb_007416_300 Hb_007416_300 Hb_000566_200--Hb_007416_300 Hb_002876_320 Hb_002876_320 Hb_000566_200--Hb_002876_320 Hb_000982_060 Hb_000982_060 Hb_010485_020--Hb_000982_060 Hb_000000_270 Hb_000000_270 Hb_010485_020--Hb_000000_270 Hb_010485_020--Hb_002311_180 Hb_000120_170 Hb_000120_170 Hb_010485_020--Hb_000120_170 Hb_135831_010 Hb_135831_010 Hb_010485_020--Hb_135831_010 Hb_005730_120 Hb_005730_120 Hb_002311_180--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_002311_180--Hb_005271_220 Hb_002311_180--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_002311_180--Hb_002872_030 Hb_007885_060 Hb_007885_060 Hb_002311_180--Hb_007885_060 Hb_021576_100 Hb_021576_100 Hb_002311_180--Hb_021576_100 Hb_013358_040 Hb_013358_040 Hb_000915_180--Hb_013358_040 Hb_001195_530 Hb_001195_530 Hb_000915_180--Hb_001195_530 Hb_000069_310 Hb_000069_310 Hb_000915_180--Hb_000069_310 Hb_021419_030 Hb_021419_030 Hb_000915_180--Hb_021419_030 Hb_001408_140 Hb_001408_140 Hb_000915_180--Hb_001408_140 Hb_000331_680 Hb_000331_680 Hb_000915_180--Hb_000331_680 Hb_132840_110 Hb_132840_110 Hb_000340_420--Hb_132840_110 Hb_003531_080 Hb_003531_080 Hb_000340_420--Hb_003531_080 Hb_007007_120 Hb_007007_120 Hb_000340_420--Hb_007007_120 Hb_001789_190 Hb_001789_190 Hb_000340_420--Hb_001789_190 Hb_007290_030 Hb_007290_030 Hb_000340_420--Hb_007290_030 Hb_000214_050 Hb_000214_050 Hb_000340_420--Hb_000214_050 Hb_010381_090 Hb_010381_090 Hb_007416_300--Hb_010381_090 Hb_001051_080 Hb_001051_080 Hb_007416_300--Hb_001051_080 Hb_007416_300--Hb_002872_030 Hb_003549_150 Hb_003549_150 Hb_007416_300--Hb_003549_150 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_002398_030 Hb_002398_030 Hb_002876_320--Hb_002398_030 Hb_000008_220 Hb_000008_220 Hb_002876_320--Hb_000008_220 Hb_008120_030 Hb_008120_030 Hb_002876_320--Hb_008120_030 Hb_000009_400 Hb_000009_400 Hb_002876_320--Hb_000009_400 Hb_002876_320--Hb_033642_030 Hb_000445_050 Hb_000445_050 Hb_002876_320--Hb_000445_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.871 18.3438 19.9177 19.3652 21.2964 16.3736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6416 13.3569 13.443 6.42778 13.433

CAGE analysis