Hb_000567_030

Information

Type -
Description -
Location Contig567: 70561-80195
Sequence    

Annotation

kegg
ID rcu:RCOM_1014660
description hypothetical protein
nr
ID KDP21079.1
description hypothetical protein JCGZ_21550 [Jatropha curcas]
swissprot
ID P53980
description Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1
trembl
ID A0A067JNJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21550 PE=4 SV=1
Gene Ontology
ID GO:0016787
description maternal effect embryo arrest 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_030 0.0 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
2 Hb_005056_060 0.064240443 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
3 Hb_004108_080 0.0854157938 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
4 Hb_005389_150 0.1018595075 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000086_380 0.1033096837 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
6 Hb_000003_080 0.1065579368 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
7 Hb_003266_050 0.1089755424 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
8 Hb_000840_190 0.1097235414 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
9 Hb_001278_110 0.110093651 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
10 Hb_004297_070 0.1137577045 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
11 Hb_007254_040 0.116839405 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
12 Hb_008695_040 0.1216772576 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
13 Hb_002685_190 0.121857423 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
14 Hb_004970_110 0.1220878626 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
15 Hb_000116_440 0.122621233 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
16 Hb_000927_020 0.123988635 - - synaptosomal associated protein, putative [Ricinus communis]
17 Hb_032717_080 0.1241465607 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
18 Hb_001009_040 0.1252421913 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
19 Hb_011310_190 0.1253617876 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
20 Hb_022461_010 0.1266084721 - - -

Gene co-expression network

sample Hb_000567_030 Hb_000567_030 Hb_005056_060 Hb_005056_060 Hb_000567_030--Hb_005056_060 Hb_004108_080 Hb_004108_080 Hb_000567_030--Hb_004108_080 Hb_005389_150 Hb_005389_150 Hb_000567_030--Hb_005389_150 Hb_000086_380 Hb_000086_380 Hb_000567_030--Hb_000086_380 Hb_000003_080 Hb_000003_080 Hb_000567_030--Hb_000003_080 Hb_003266_050 Hb_003266_050 Hb_000567_030--Hb_003266_050 Hb_005056_060--Hb_004108_080 Hb_000395_080 Hb_000395_080 Hb_005056_060--Hb_000395_080 Hb_004310_030 Hb_004310_030 Hb_005056_060--Hb_004310_030 Hb_005329_020 Hb_005329_020 Hb_005056_060--Hb_005329_020 Hb_007254_040 Hb_007254_040 Hb_005056_060--Hb_007254_040 Hb_008554_020 Hb_008554_020 Hb_004108_080--Hb_008554_020 Hb_004108_080--Hb_004310_030 Hb_000446_030 Hb_000446_030 Hb_004108_080--Hb_000446_030 Hb_004108_080--Hb_005329_020 Hb_005389_150--Hb_003266_050 Hb_001009_040 Hb_001009_040 Hb_005389_150--Hb_001009_040 Hb_000169_010 Hb_000169_010 Hb_005389_150--Hb_000169_010 Hb_003011_040 Hb_003011_040 Hb_005389_150--Hb_003011_040 Hb_001269_320 Hb_001269_320 Hb_005389_150--Hb_001269_320 Hb_010691_060 Hb_010691_060 Hb_005389_150--Hb_010691_060 Hb_004310_130 Hb_004310_130 Hb_000086_380--Hb_004310_130 Hb_005291_030 Hb_005291_030 Hb_000086_380--Hb_005291_030 Hb_027472_150 Hb_027472_150 Hb_000086_380--Hb_027472_150 Hb_021596_030 Hb_021596_030 Hb_000086_380--Hb_021596_030 Hb_002524_010 Hb_002524_010 Hb_000086_380--Hb_002524_010 Hb_001579_320 Hb_001579_320 Hb_000086_380--Hb_001579_320 Hb_000116_440 Hb_000116_440 Hb_000003_080--Hb_000116_440 Hb_000342_100 Hb_000342_100 Hb_000003_080--Hb_000342_100 Hb_020581_010 Hb_020581_010 Hb_000003_080--Hb_020581_010 Hb_000272_020 Hb_000272_020 Hb_000003_080--Hb_000272_020 Hb_000220_220 Hb_000220_220 Hb_000003_080--Hb_000220_220 Hb_001842_100 Hb_001842_100 Hb_000003_080--Hb_001842_100 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_003266_050--Hb_010691_060 Hb_001278_110 Hb_001278_110 Hb_003266_050--Hb_001278_110 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003058_130 Hb_003058_130 Hb_003266_050--Hb_003058_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.99821 1.48681 1.49927 1.36979 2.10306 4.42255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.18378 3.9565 1.22088 2.36389 1.36021

CAGE analysis