Hb_000567_050

Information

Type -
Description -
Location Contig567: 104841-118606
Sequence    

Annotation

kegg
ID rcu:RCOM_1014680
description Heterogeneous nuclear ribonucleoprotein A1, putative
nr
ID XP_012091755.1
description PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
swissprot
ID Q9LKA4
description UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1
trembl
ID A0A067JM53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21551 PE=4 SV=1
Gene Ontology
ID GO:0005730
description ubp1-associated protein 2c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49096: 109127-111738 , PASA_asmbl_49097: 110276-111738 , PASA_asmbl_49098: 107493-108423 , PASA_asmbl_49099: 108436-108928 , PASA_asmbl_49100: 113390-113941 , PASA_asmbl_49101: 107018-111738 , PASA_asmbl_49102: 109127-111738 , PASA_asmbl_49103: 109127-118457 , PASA_asmbl_49105: 116632-116839 , PASA_asmbl_49106: 115978-118027
cDNA
(Sanger)
(ID:Location)		 014_P07.ab1: 111151-111653

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_050 0.0 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
2 Hb_003428_070 0.0506765392 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
3 Hb_000023_190 0.0558799028 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
4 Hb_000743_040 0.0580060669 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
5 Hb_000600_070 0.0596436284 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
6 Hb_002044_060 0.0606151428 - - elongation factor ts, putative [Ricinus communis]
7 Hb_010381_060 0.0635362879 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
8 Hb_003464_020 0.0641923085 - - srpk, putative [Ricinus communis]
9 Hb_006252_040 0.066305269 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
10 Hb_002027_270 0.0673968141 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
11 Hb_016898_010 0.067526244 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
12 Hb_000329_090 0.0677001187 - - arginase, putative [Ricinus communis]
13 Hb_000212_240 0.069779126 - - short-chain dehydrogenase, putative [Ricinus communis]
14 Hb_004370_030 0.0717952058 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
15 Hb_021409_170 0.0721342561 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
16 Hb_002784_060 0.0726952302 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
17 Hb_002960_160 0.0749850327 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
18 Hb_000046_440 0.0750864359 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
19 Hb_005494_020 0.0751729508 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
20 Hb_003362_070 0.0751886524 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_050 Hb_000567_050 Hb_003428_070 Hb_003428_070 Hb_000567_050--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000567_050--Hb_000023_190 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_002044_060 Hb_002044_060 Hb_000567_050--Hb_002044_060 Hb_010381_060 Hb_010381_060 Hb_000567_050--Hb_010381_060 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_003464_020 Hb_003464_020 Hb_000023_190--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_000023_190--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_000023_190--Hb_001488_410 Hb_021409_170 Hb_021409_170 Hb_000023_190--Hb_021409_170 Hb_000329_090 Hb_000329_090 Hb_000743_040--Hb_000329_090 Hb_000743_040--Hb_000600_070 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_000743_040--Hb_010381_060 Hb_009535_020 Hb_009535_020 Hb_000600_070--Hb_009535_020 Hb_000347_130 Hb_000347_130 Hb_000600_070--Hb_000347_130 Hb_000600_070--Hb_003428_070 Hb_000600_070--Hb_000023_190 Hb_004370_030 Hb_004370_030 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_026099_010 Hb_026099_010 Hb_002044_060--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160 Hb_000789_080 Hb_000789_080 Hb_002044_060--Hb_000789_080 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.0883 40.7724 22.442 30.879 64.0399 97.7078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.6285 26.5378 29.4355 38.302 34.1549

CAGE analysis