Hb_000567_090

Information

Type -
Description -
Location Contig567: 144735-148457
Sequence    

Annotation

kegg
ID rcu:RCOM_1014850
description ketol-acid reductoisomerase, chloroplast precursor, putative (EC:1.1.1.86)
nr
ID XP_012091751.1
description PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q05758
description Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2
trembl
ID A0A067JNK4
description Ketol-acid reductoisomerase OS=Jatropha curcas GN=JCGZ_21555 PE=3 SV=1
Gene Ontology
ID GO:0005618
description ketol-acid chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49113: 144791-148371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_090 0.0 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
2 Hb_080147_020 0.0773515939 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
3 Hb_052135_020 0.1079492202 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
4 Hb_086639_050 0.108420684 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_001221_580 0.1098748948 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
6 Hb_000098_180 0.1141780264 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
7 Hb_001117_080 0.1157077209 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
8 Hb_000661_220 0.117144315 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
9 Hb_002411_160 0.1185891539 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
10 Hb_129204_020 0.1254042012 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
11 Hb_005903_020 0.1283220344 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
12 Hb_005504_030 0.1290398539 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
13 Hb_024758_020 0.1313023424 - - acyl-CoA binding protein 3B [Vernicia fordii]
14 Hb_000803_120 0.1314249217 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
15 Hb_007575_030 0.1341851022 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
16 Hb_001195_220 0.1342074822 - - sugar transporter, putative [Ricinus communis]
17 Hb_004837_220 0.1344832474 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
18 Hb_002317_010 0.137491969 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
19 Hb_172706_020 0.1375556029 - - PREDICTED: protein ABIL2 [Jatropha curcas]
20 Hb_000477_070 0.1376095689 - - histone h2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000567_090 Hb_000567_090 Hb_080147_020 Hb_080147_020 Hb_000567_090--Hb_080147_020 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_086639_050 Hb_086639_050 Hb_000567_090--Hb_086639_050 Hb_001221_580 Hb_001221_580 Hb_000567_090--Hb_001221_580 Hb_000098_180 Hb_000098_180 Hb_000567_090--Hb_000098_180 Hb_001117_080 Hb_001117_080 Hb_000567_090--Hb_001117_080 Hb_002411_160 Hb_002411_160 Hb_080147_020--Hb_002411_160 Hb_080147_020--Hb_086639_050 Hb_000098_150 Hb_000098_150 Hb_080147_020--Hb_000098_150 Hb_080147_020--Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_080147_020--Hb_004108_210 Hb_002317_010 Hb_002317_010 Hb_052135_020--Hb_002317_010 Hb_129204_020 Hb_129204_020 Hb_052135_020--Hb_129204_020 Hb_010068_070 Hb_010068_070 Hb_052135_020--Hb_010068_070 Hb_024758_020 Hb_024758_020 Hb_052135_020--Hb_024758_020 Hb_005833_030 Hb_005833_030 Hb_052135_020--Hb_005833_030 Hb_086639_050--Hb_002411_160 Hb_086639_050--Hb_001117_080 Hb_002249_170 Hb_002249_170 Hb_086639_050--Hb_002249_170 Hb_000111_390 Hb_000111_390 Hb_086639_050--Hb_000111_390 Hb_001221_580--Hb_004108_210 Hb_001221_580--Hb_000098_150 Hb_000890_160 Hb_000890_160 Hb_001221_580--Hb_000890_160 Hb_003428_090 Hb_003428_090 Hb_001221_580--Hb_003428_090 Hb_005903_020 Hb_005903_020 Hb_001221_580--Hb_005903_020 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010 Hb_002432_050 Hb_002432_050 Hb_001117_080--Hb_002432_050 Hb_000649_330 Hb_000649_330 Hb_001117_080--Hb_000649_330 Hb_001117_080--Hb_002249_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.49889 35.7722 73.0417 38.0392 5.39494 15.0563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.08183 9.52347 6.91453 45.9412 23.5575

CAGE analysis