Hb_000567_110

Information

Type -
Description -
Location Contig567: 151169-166667
Sequence    

Annotation

kegg
ID rcu:RCOM_1118640
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID KDP21085.1
description hypothetical protein JCGZ_21556 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067JM58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21556 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_110 0.0 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
2 Hb_000024_020 0.1014994519 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
3 Hb_006573_280 0.1061269265 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
4 Hb_004724_300 0.1083430297 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
5 Hb_003633_150 0.1112691774 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
6 Hb_004112_050 0.1131998941 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_005694_150 0.1154841673 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
8 Hb_001247_160 0.117250724 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
9 Hb_000365_340 0.1199615997 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
10 Hb_001310_080 0.124070465 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
11 Hb_097634_010 0.1251489273 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
12 Hb_002725_080 0.1267420883 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_004393_030 0.1271608824 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
14 Hb_005282_010 0.127349755 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
15 Hb_000054_140 0.1279458153 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
16 Hb_001677_120 0.1280662535 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_113396_010 0.1281259451 - - cytochrome P450, putative [Ricinus communis]
18 Hb_007102_010 0.1282364169 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
19 Hb_002218_080 0.1320665049 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_024650_010 0.1324327085 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]

Gene co-expression network

sample Hb_000567_110 Hb_000567_110 Hb_000024_020 Hb_000024_020 Hb_000567_110--Hb_000024_020 Hb_006573_280 Hb_006573_280 Hb_000567_110--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_000567_110--Hb_004724_300 Hb_003633_150 Hb_003633_150 Hb_000567_110--Hb_003633_150 Hb_004112_050 Hb_004112_050 Hb_000567_110--Hb_004112_050 Hb_005694_150 Hb_005694_150 Hb_000567_110--Hb_005694_150 Hb_113396_010 Hb_113396_010 Hb_000024_020--Hb_113396_010 Hb_007441_150 Hb_007441_150 Hb_000024_020--Hb_007441_150 Hb_002218_080 Hb_002218_080 Hb_000024_020--Hb_002218_080 Hb_001310_080 Hb_001310_080 Hb_000024_020--Hb_001310_080 Hb_000024_020--Hb_004112_050 Hb_000054_140 Hb_000054_140 Hb_006573_280--Hb_000054_140 Hb_001677_120 Hb_001677_120 Hb_006573_280--Hb_001677_120 Hb_002370_060 Hb_002370_060 Hb_006573_280--Hb_002370_060 Hb_001248_170 Hb_001248_170 Hb_006573_280--Hb_001248_170 Hb_006573_280--Hb_004112_050 Hb_000836_220 Hb_000836_220 Hb_006573_280--Hb_000836_220 Hb_001821_050 Hb_001821_050 Hb_004724_300--Hb_001821_050 Hb_134022_010 Hb_134022_010 Hb_004724_300--Hb_134022_010 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_007102_010 Hb_007102_010 Hb_004724_300--Hb_007102_010 Hb_004724_300--Hb_004112_050 Hb_004724_300--Hb_001677_120 Hb_009476_110 Hb_009476_110 Hb_003633_150--Hb_009476_110 Hb_001247_160 Hb_001247_160 Hb_003633_150--Hb_001247_160 Hb_005282_010 Hb_005282_010 Hb_003633_150--Hb_005282_010 Hb_182970_010 Hb_182970_010 Hb_003633_150--Hb_182970_010 Hb_001405_060 Hb_001405_060 Hb_003633_150--Hb_001405_060 Hb_004112_050--Hb_001310_080 Hb_004112_050--Hb_002218_080 Hb_004112_050--Hb_007102_010 Hb_007007_030 Hb_007007_030 Hb_004112_050--Hb_007007_030 Hb_004112_050--Hb_113396_010 Hb_050847_030 Hb_050847_030 Hb_005694_150--Hb_050847_030 Hb_000375_150 Hb_000375_150 Hb_005694_150--Hb_000375_150 Hb_000325_070 Hb_000325_070 Hb_005694_150--Hb_000325_070 Hb_000365_340 Hb_000365_340 Hb_005694_150--Hb_000365_340 Hb_013691_060 Hb_013691_060 Hb_005694_150--Hb_013691_060 Hb_000892_030 Hb_000892_030 Hb_005694_150--Hb_000892_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00382483 0.543036 0.237871 0.306724 0 0.00345472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00681475 0.0131194 0.0458477 0.146416

CAGE analysis