Hb_000567_120

Information

Type -
Description -
Location Contig567: 171992-174701
Sequence    

Annotation

kegg
ID rcu:RCOM_1457950
description hypothetical protein
nr
ID XP_012091760.1
description PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
swissprot
ID A8KBY2
description Transcription factor IIIB 50 kDa subunit OS=Danio rerio GN=brf2 PE=2 SV=1
trembl
ID A0A067JE97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21559 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor iiib 50 kda subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_120 0.0 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
2 Hb_008695_100 0.0600103588 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
3 Hb_001140_220 0.0705094599 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000723_080 0.0712849523 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
5 Hb_000258_270 0.0725099487 - - PREDICTED: cullin-3A [Jatropha curcas]
6 Hb_004607_030 0.0742921298 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
7 Hb_002005_020 0.0782914368 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000373_130 0.0792268874 - - PREDICTED: protein FAM188A [Jatropha curcas]
9 Hb_005289_030 0.0842927932 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
10 Hb_005162_070 0.086119703 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002027_040 0.0867460121 - - synapse-associated protein, putative [Ricinus communis]
12 Hb_001959_190 0.0873153358 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
13 Hb_016901_010 0.08940235 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
14 Hb_000976_410 0.0910962717 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
15 Hb_010608_050 0.0929183315 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
16 Hb_000629_120 0.0929349199 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
17 Hb_004052_090 0.0936470061 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
18 Hb_008695_210 0.0936516362 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
19 Hb_000138_110 0.0937882348 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
20 Hb_004079_030 0.0942379249 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_120 Hb_000567_120 Hb_008695_100 Hb_008695_100 Hb_000567_120--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_008695_100--Hb_000723_080 Hb_005162_070 Hb_005162_070 Hb_008695_100--Hb_005162_070 Hb_010608_050 Hb_010608_050 Hb_008695_100--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_008695_100--Hb_000617_150 Hb_002235_280 Hb_002235_280 Hb_008695_100--Hb_002235_280 Hb_011242_040 Hb_011242_040 Hb_001140_220--Hb_011242_040 Hb_001140_220--Hb_002235_280 Hb_001140_220--Hb_000258_270 Hb_001140_220--Hb_008695_100 Hb_001140_220--Hb_000723_080 Hb_002256_020 Hb_002256_020 Hb_000723_080--Hb_002256_020 Hb_016901_010 Hb_016901_010 Hb_000723_080--Hb_016901_010 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030 Hb_004052_090 Hb_004052_090 Hb_000258_270--Hb_004052_090 Hb_000836_040 Hb_000836_040 Hb_000258_270--Hb_000836_040 Hb_000003_250 Hb_000003_250 Hb_000258_270--Hb_000003_250 Hb_000258_270--Hb_016901_010 Hb_001959_190 Hb_001959_190 Hb_004607_030--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_004607_030--Hb_010608_050 Hb_004607_030--Hb_008695_100 Hb_025557_030 Hb_025557_030 Hb_004607_030--Hb_025557_030 Hb_004218_110 Hb_004218_110 Hb_002005_020--Hb_004218_110 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002759_060 Hb_002759_060 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1456 7.72309 3.41714 9.53569 6.07345 11.8783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8658 15.8634 24.6212 6.89134 7.68152

CAGE analysis