Hb_000567_180

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig567: 214009-215142
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05580g
description POPTRDRAFT_1075306; Dof zinc finger protein DOF2.3
nr
ID XP_012091770.1
description PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
swissprot
ID P68350
description Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1
trembl
ID A0A067JNL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21565 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49122: 213967-215111 , PASA_asmbl_49123: 214051-214394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_180 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
2 Hb_005408_070 0.1452252691 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
3 Hb_001922_060 0.1455700025 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002539_040 0.1469608317 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
5 Hb_000175_470 0.1483273405 - - lactoylglutathione lyase, putative [Ricinus communis]
6 Hb_000216_050 0.1587239176 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
7 Hb_026549_050 0.1654547622 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
8 Hb_005813_010 0.1734276611 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_000110_290 0.1812993851 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002602_030 0.1813806084 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
11 Hb_000002_360 0.1851870529 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
12 Hb_029977_020 0.1862790786 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
13 Hb_000007_430 0.1863238446 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
14 Hb_000946_070 0.187460447 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_001148_100 0.1934607165 - - -
16 Hb_000181_210 0.1982259165 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
17 Hb_001456_050 0.2002049753 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_002835_340 0.2007477478 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
19 Hb_004324_030 0.2008160662 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
20 Hb_000110_380 0.2012972046 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_180 Hb_000567_180 Hb_005408_070 Hb_005408_070 Hb_000567_180--Hb_005408_070 Hb_001922_060 Hb_001922_060 Hb_000567_180--Hb_001922_060 Hb_002539_040 Hb_002539_040 Hb_000567_180--Hb_002539_040 Hb_000175_470 Hb_000175_470 Hb_000567_180--Hb_000175_470 Hb_000216_050 Hb_000216_050 Hb_000567_180--Hb_000216_050 Hb_026549_050 Hb_026549_050 Hb_000567_180--Hb_026549_050 Hb_005408_070--Hb_002539_040 Hb_005408_070--Hb_000175_470 Hb_001054_090 Hb_001054_090 Hb_005408_070--Hb_001054_090 Hb_000645_200 Hb_000645_200 Hb_005408_070--Hb_000645_200 Hb_005813_010 Hb_005813_010 Hb_005408_070--Hb_005813_010 Hb_001922_060--Hb_026549_050 Hb_000181_210 Hb_000181_210 Hb_001922_060--Hb_000181_210 Hb_000832_280 Hb_000832_280 Hb_001922_060--Hb_000832_280 Hb_000002_360 Hb_000002_360 Hb_001922_060--Hb_000002_360 Hb_004324_030 Hb_004324_030 Hb_001922_060--Hb_004324_030 Hb_002539_040--Hb_000175_470 Hb_001148_090 Hb_001148_090 Hb_002539_040--Hb_001148_090 Hb_000889_010 Hb_000889_010 Hb_002539_040--Hb_000889_010 Hb_001148_100 Hb_001148_100 Hb_002539_040--Hb_001148_100 Hb_000175_470--Hb_001148_100 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_172706_020 Hb_172706_020 Hb_000175_470--Hb_172706_020 Hb_000216_050--Hb_004324_030 Hb_001287_060 Hb_001287_060 Hb_000216_050--Hb_001287_060 Hb_000216_050--Hb_000002_360 Hb_000216_050--Hb_026549_050 Hb_002739_040 Hb_002739_040 Hb_000216_050--Hb_002739_040 Hb_000216_050--Hb_143766_080 Hb_026549_050--Hb_000181_210 Hb_026549_050--Hb_004324_030 Hb_026549_050--Hb_000002_360 Hb_000003_020 Hb_000003_020 Hb_026549_050--Hb_000003_020 Hb_026549_050--Hb_000832_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100979 2.40778 2.91633 7.94516 0 0.0865305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.388312 3.11387 0.218608 4.44116 1.81781

CAGE analysis