Hb_000567_200

Information

Type -
Description -
Location Contig567: 248965-255167
Sequence    

Annotation

kegg
ID rcu:RCOM_1015400
description hypothetical protein
nr
ID XP_012091774.1
description PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
swissprot
ID Q9S7R3
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1
trembl
ID A0A067JBB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21567 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49130: 248888-255256
cDNA
(Sanger)
(ID:Location)		 007_C20.ab1: 248888-255043 , 019_I02.ab1: 248920-249429 , 033_E08.ab1: 248888-254972

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_200 0.0 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
2 Hb_003428_110 0.1023449854 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
3 Hb_000163_290 0.110259969 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
4 Hb_002924_050 0.1114731202 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
5 Hb_006499_010 0.1167532639 - - -
6 Hb_001930_070 0.1175056227 - - -
7 Hb_001518_020 0.1209339709 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
8 Hb_006816_360 0.1257971525 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
9 Hb_017434_090 0.1262592025 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000472_040 0.1276904446 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
11 Hb_000371_110 0.128230117 - - -
12 Hb_007849_040 0.1311546803 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
13 Hb_001186_060 0.1314528559 - - -
14 Hb_000176_140 0.131689067 - - PREDICTED: bystin [Jatropha curcas]
15 Hb_000771_140 0.1317043767 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
16 Hb_000179_250 0.1331220575 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
17 Hb_000510_100 0.1349851078 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_031403_010 0.1359438873 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
19 Hb_005245_090 0.1369559631 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
20 Hb_001141_080 0.1370676639 - - PREDICTED: protein RDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_200 Hb_000567_200 Hb_003428_110 Hb_003428_110 Hb_000567_200--Hb_003428_110 Hb_000163_290 Hb_000163_290 Hb_000567_200--Hb_000163_290 Hb_002924_050 Hb_002924_050 Hb_000567_200--Hb_002924_050 Hb_006499_010 Hb_006499_010 Hb_000567_200--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000567_200--Hb_001930_070 Hb_001518_020 Hb_001518_020 Hb_000567_200--Hb_001518_020 Hb_017434_090 Hb_017434_090 Hb_003428_110--Hb_017434_090 Hb_001141_080 Hb_001141_080 Hb_003428_110--Hb_001141_080 Hb_003428_110--Hb_001518_020 Hb_009382_020 Hb_009382_020 Hb_003428_110--Hb_009382_020 Hb_003747_240 Hb_003747_240 Hb_003428_110--Hb_003747_240 Hb_000163_290--Hb_006499_010 Hb_000117_040 Hb_000117_040 Hb_000163_290--Hb_000117_040 Hb_000163_290--Hb_001518_020 Hb_000163_290--Hb_003747_240 Hb_000371_110 Hb_000371_110 Hb_000163_290--Hb_000371_110 Hb_001186_060 Hb_001186_060 Hb_000163_290--Hb_001186_060 Hb_002924_050--Hb_001930_070 Hb_000472_040 Hb_000472_040 Hb_002924_050--Hb_000472_040 Hb_116701_020 Hb_116701_020 Hb_002924_050--Hb_116701_020 Hb_002924_050--Hb_006499_010 Hb_000784_130 Hb_000784_130 Hb_002924_050--Hb_000784_130 Hb_006499_010--Hb_001930_070 Hb_007245_090 Hb_007245_090 Hb_006499_010--Hb_007245_090 Hb_000033_050 Hb_000033_050 Hb_006499_010--Hb_000033_050 Hb_006499_010--Hb_001186_060 Hb_006499_010--Hb_003747_240 Hb_001930_070--Hb_001186_060 Hb_001930_070--Hb_007245_090 Hb_001930_070--Hb_000033_050 Hb_000014_100 Hb_000014_100 Hb_001930_070--Hb_000014_100 Hb_000856_340 Hb_000856_340 Hb_001518_020--Hb_000856_340 Hb_000809_040 Hb_000809_040 Hb_001518_020--Hb_000809_040 Hb_000300_620 Hb_000300_620 Hb_001518_020--Hb_000300_620 Hb_031089_010 Hb_031089_010 Hb_001518_020--Hb_031089_010 Hb_001518_020--Hb_009382_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
912.863 173.866 1.04537 34.1369 634.728 592.107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
732.7 333.691 462.222 183.652 0.213367

CAGE analysis