Hb_000567_220

Information

Type -
Description -
Location Contig567: 264661-265203
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07340g
description POPTRDRAFT_235320; hypothetical protein
nr
ID XP_011011485.1
description PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I1L4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s07340g PE=4 SV=2
Gene Ontology
ID GO:0009507
description abc transporter h family member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_220 0.0 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
2 Hb_000604_050 0.1390350356 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_000270_530 0.1415328535 - - hypothetical protein POPTR_0015s08220g [Populus trichocarpa]
4 Hb_103149_010 0.1429153741 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
5 Hb_012395_260 0.1494482778 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
6 Hb_009476_160 0.1533557008 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
7 Hb_004586_230 0.154103604 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000666_120 0.1587499878 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_005056_100 0.1607219888 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
10 Hb_027905_010 0.1610238077 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_005643_080 0.1647617919 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
12 Hb_000733_090 0.1667151024 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
13 Hb_020301_010 0.1667317954 - - cytochrome P450, putative [Ricinus communis]
14 Hb_049915_010 0.1670357173 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
15 Hb_001999_200 0.1684915432 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
16 Hb_004297_080 0.1685880625 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_007292_050 0.1740907505 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
18 Hb_002035_130 0.1760805034 - - plasma membrane H+-ATPase [Hevea brasiliensis]
19 Hb_001195_650 0.1775659348 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
20 Hb_010267_030 0.1811444317 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000567_220 Hb_000567_220 Hb_000604_050 Hb_000604_050 Hb_000567_220--Hb_000604_050 Hb_000270_530 Hb_000270_530 Hb_000567_220--Hb_000270_530 Hb_103149_010 Hb_103149_010 Hb_000567_220--Hb_103149_010 Hb_012395_260 Hb_012395_260 Hb_000567_220--Hb_012395_260 Hb_009476_160 Hb_009476_160 Hb_000567_220--Hb_009476_160 Hb_004586_230 Hb_004586_230 Hb_000567_220--Hb_004586_230 Hb_003906_150 Hb_003906_150 Hb_000604_050--Hb_003906_150 Hb_000604_050--Hb_000270_530 Hb_003529_010 Hb_003529_010 Hb_000604_050--Hb_003529_010 Hb_004007_190 Hb_004007_190 Hb_000604_050--Hb_004007_190 Hb_000604_050--Hb_103149_010 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070 Hb_000702_040 Hb_000702_040 Hb_000270_530--Hb_000702_040 Hb_000270_530--Hb_103149_010 Hb_000172_150 Hb_000172_150 Hb_000270_530--Hb_000172_150 Hb_000270_530--Hb_003529_010 Hb_000733_090 Hb_000733_090 Hb_103149_010--Hb_000733_090 Hb_103149_010--Hb_000702_040 Hb_103149_010--Hb_004586_230 Hb_001016_040 Hb_001016_040 Hb_103149_010--Hb_001016_040 Hb_003939_090 Hb_003939_090 Hb_103149_010--Hb_003939_090 Hb_012395_260--Hb_004586_230 Hb_004659_110 Hb_004659_110 Hb_012395_260--Hb_004659_110 Hb_000201_070 Hb_000201_070 Hb_012395_260--Hb_000201_070 Hb_012395_260--Hb_000604_050 Hb_002025_120 Hb_002025_120 Hb_012395_260--Hb_002025_120 Hb_012395_260--Hb_000702_040 Hb_004282_040 Hb_004282_040 Hb_009476_160--Hb_004282_040 Hb_000638_180 Hb_000638_180 Hb_009476_160--Hb_000638_180 Hb_000692_230 Hb_000692_230 Hb_009476_160--Hb_000692_230 Hb_009476_160--Hb_004586_230 Hb_002004_010 Hb_002004_010 Hb_009476_160--Hb_002004_010 Hb_009476_160--Hb_001016_040 Hb_004586_230--Hb_000702_040 Hb_000365_190 Hb_000365_190 Hb_004586_230--Hb_000365_190 Hb_001587_220 Hb_001587_220 Hb_004586_230--Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_004586_230--Hb_006573_060 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2235 81.549 18.0056 101.018 2.07913 1.18533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.705516 0 1.74905 3.967 14.9343

CAGE analysis