Hb_000567_250

Information

Type -
Description -
Location Contig567: 298209-298735
Sequence    

Annotation

kegg
ID pmum:103324953
description abscisic acid receptor PYL12
nr
ID KJB57402.1
description hypothetical protein B456_009G162000 [Gossypium raimondii]
swissprot
ID Q9FJ50
description Abscisic acid receptor PYL11 OS=Arabidopsis thaliana GN=PYL11 PE=3 SV=1
trembl
ID A0A0D2QH80
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G162000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_250 0.0 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
2 Hb_000249_130 0.1297559519 - - hypothetical protein RCOM_0254640 [Ricinus communis]
3 Hb_003030_080 0.1379525675 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_004453_140 0.1383477365 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
5 Hb_002685_090 0.1427405121 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
6 Hb_000041_070 0.1441744807 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
7 Hb_017124_020 0.150889752 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
8 Hb_001606_070 0.1512655873 - - fimbrin, putative [Ricinus communis]
9 Hb_000120_650 0.155824227 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
10 Hb_001396_230 0.1663559598 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
11 Hb_000329_600 0.1673012974 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
12 Hb_015934_020 0.1674839957 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
13 Hb_027892_010 0.1681957049 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
14 Hb_000193_240 0.1690844546 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
15 Hb_004871_050 0.1706890554 - - hypothetical protein F383_22684 [Gossypium arboreum]
16 Hb_001514_180 0.1736451568 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
17 Hb_001396_220 0.1760024255 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_145226_010 0.176887099 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
19 Hb_004206_030 0.1769419551 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
20 Hb_000078_010 0.1773203009 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000567_250 Hb_000567_250 Hb_000249_130 Hb_000249_130 Hb_000567_250--Hb_000249_130 Hb_003030_080 Hb_003030_080 Hb_000567_250--Hb_003030_080 Hb_004453_140 Hb_004453_140 Hb_000567_250--Hb_004453_140 Hb_002685_090 Hb_002685_090 Hb_000567_250--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_000567_250--Hb_000041_070 Hb_017124_020 Hb_017124_020 Hb_000567_250--Hb_017124_020 Hb_143629_090 Hb_143629_090 Hb_000249_130--Hb_143629_090 Hb_000249_130--Hb_003030_080 Hb_003497_030 Hb_003497_030 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070 Hb_000380_180 Hb_000380_180 Hb_000249_130--Hb_000380_180 Hb_003030_080--Hb_001606_070 Hb_001396_230 Hb_001396_230 Hb_003030_080--Hb_001396_230 Hb_003030_080--Hb_003497_030 Hb_000849_040 Hb_000849_040 Hb_003030_080--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_003030_080--Hb_005779_100 Hb_002983_030 Hb_002983_030 Hb_004453_140--Hb_002983_030 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_000193_240 Hb_000193_240 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_001143_090 Hb_001143_090 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_002685_090--Hb_000041_070 Hb_002685_090--Hb_015934_020 Hb_012725_110 Hb_012725_110 Hb_002685_090--Hb_012725_110 Hb_002387_060 Hb_002387_060 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050 Hb_001741_080 Hb_001741_080 Hb_000041_070--Hb_001741_080 Hb_001514_180 Hb_001514_180 Hb_000041_070--Hb_001514_180 Hb_004206_030 Hb_004206_030 Hb_000041_070--Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_000041_070--Hb_060668_010 Hb_000041_070--Hb_002387_060 Hb_000120_650 Hb_000120_650 Hb_017124_020--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_017124_020--Hb_004871_050 Hb_000972_010 Hb_000972_010 Hb_017124_020--Hb_000972_010 Hb_027892_010 Hb_027892_010 Hb_017124_020--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_017124_020--Hb_000249_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.7395 0.556876 0 0 62.8268 103.323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
136.426 110.515 271.782 17.6229 0

CAGE analysis