Hb_000567_260

Information

Type -
Description -
Location Contig567: 314210-324168
Sequence    

Annotation

kegg
ID cit:102627545
description serine/threonine-protein kinase HT1-like
nr
ID CDY34777.1
description BnaA09g41440D [Brassica napus]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A0D9X5H6
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49139: 314032-320373 , PASA_asmbl_49141: 323794-325794 , PASA_asmbl_49142: 321066-325828
cDNA
(Sanger)
(ID:Location)		 052_I22.ab1: 316631-320286

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_260 0.0 - - BnaA09g41440D [Brassica napus]
2 Hb_001671_020 0.0458496542 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
3 Hb_000614_230 0.0579432764 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
4 Hb_001329_300 0.0588625033 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
5 Hb_189003_080 0.0596831048 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
6 Hb_001248_130 0.0662203998 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
7 Hb_055062_030 0.0668480399 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
8 Hb_008695_210 0.0685248299 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
9 Hb_028872_140 0.0740717201 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
10 Hb_007380_070 0.0744055014 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
11 Hb_020178_070 0.0745449349 - - Protein Z, putative [Ricinus communis]
12 Hb_011918_080 0.075548541 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
13 Hb_006915_050 0.0761674772 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
14 Hb_007951_050 0.0762506627 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000200_340 0.0765849088 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_005062_070 0.0774428081 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
17 Hb_000754_060 0.0778164571 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
18 Hb_000457_150 0.0778441055 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
19 Hb_000754_040 0.0783005775 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
20 Hb_183086_060 0.0785948489 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]

Gene co-expression network

sample Hb_000567_260 Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_008695_210 Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000614_230--Hb_001329_300 Hb_002006_090 Hb_002006_090 Hb_000614_230--Hb_002006_090 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_001085_170 Hb_001085_170 Hb_000614_230--Hb_001085_170 Hb_000110_160 Hb_000110_160 Hb_001329_300--Hb_000110_160 Hb_001329_300--Hb_002006_090 Hb_008066_010 Hb_008066_010 Hb_001329_300--Hb_008066_010 Hb_001329_300--Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_002016_110 Hb_002016_110 Hb_189003_080--Hb_002016_110 Hb_002026_180 Hb_002026_180 Hb_189003_080--Hb_002026_180 Hb_189003_080--Hb_001248_130 Hb_020178_070 Hb_020178_070 Hb_001248_130--Hb_020178_070 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_001248_130--Hb_002016_110 Hb_016065_010 Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_008289_060 Hb_008289_060 Hb_055062_030--Hb_008289_060 Hb_008453_090 Hb_008453_090 Hb_055062_030--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.4008 23.319 10.4978 15.3533 41.8844 56.6403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.2491 49.7556 74.011 22.3007 16.9761

CAGE analysis