Hb_000567_270

Information

Type -
Description -
Location Contig567: 333122-340743
Sequence    

Annotation

kegg
ID pop:POPTR_0004s14130g
description POPTRDRAFT_556281, POPTRDRAFT_759434; hypothetical protein
nr
ID XP_010090534.1
description hypothetical protein L484_017162 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9QTH4
description Uncharacterized protein OS=Morus notabilis GN=L484_017162 PE=4 SV=1
Gene Ontology
ID GO:0048438
description hypothetical protein L484_017162

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49145: 336981-337311 , PASA_asmbl_49146: 337961-338108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_270 0.0 - - hypothetical protein L484_017162 [Morus notabilis]
2 Hb_003311_020 0.0859016854 - - conserved hypothetical protein [Ricinus communis]
3 Hb_032016_010 0.1048841088 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
4 Hb_007533_050 0.1095893051 - - -
5 Hb_000644_020 0.115254321 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_009851_090 0.1175885602 - - Protein ABIL2, putative [Ricinus communis]
7 Hb_006455_020 0.1211141981 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
8 Hb_155423_010 0.1212260898 - - -
9 Hb_005920_030 0.1256516919 - - putative polyprotein [Oryza sativa Japonica Group]
10 Hb_049285_010 0.1306821621 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
11 Hb_002631_270 0.132337913 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
12 Hb_003994_070 0.1336966222 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_001856_280 0.1378648978 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
14 Hb_043792_030 0.144517141 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
15 Hb_151870_010 0.1477283803 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
16 Hb_020831_070 0.1497970793 - - hypothetical protein VITISV_027174 [Vitis vinifera]
17 Hb_019654_170 0.1515810426 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
18 Hb_003462_170 0.1551161767 - - unnamed protein product [Vitis vinifera]
19 Hb_008055_030 0.1611354386 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_000260_730 0.1614739647 - - -

Gene co-expression network

sample Hb_000567_270 Hb_000567_270 Hb_003311_020 Hb_003311_020 Hb_000567_270--Hb_003311_020 Hb_032016_010 Hb_032016_010 Hb_000567_270--Hb_032016_010 Hb_007533_050 Hb_007533_050 Hb_000567_270--Hb_007533_050 Hb_000644_020 Hb_000644_020 Hb_000567_270--Hb_000644_020 Hb_009851_090 Hb_009851_090 Hb_000567_270--Hb_009851_090 Hb_006455_020 Hb_006455_020 Hb_000567_270--Hb_006455_020 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_003311_020--Hb_032016_010 Hb_003311_020--Hb_009851_090 Hb_003311_020--Hb_007533_050 Hb_000432_020 Hb_000432_020 Hb_003311_020--Hb_000432_020 Hb_032016_010--Hb_007533_050 Hb_032016_010--Hb_009851_090 Hb_003073_030 Hb_003073_030 Hb_032016_010--Hb_003073_030 Hb_040245_010 Hb_040245_010 Hb_032016_010--Hb_040245_010 Hb_007533_050--Hb_000432_020 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010 Hb_007533_050--Hb_006455_020 Hb_170878_020 Hb_170878_020 Hb_000644_020--Hb_170878_020 Hb_000644_020--Hb_032016_010 Hb_000644_020--Hb_040245_010 Hb_000644_020--Hb_006455_020 Hb_000644_020--Hb_003073_030 Hb_009851_090--Hb_003994_070 Hb_155423_010 Hb_155423_010 Hb_009851_090--Hb_155423_010 Hb_002631_270 Hb_002631_270 Hb_009851_090--Hb_002631_270 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000476_030 Hb_000476_030 Hb_006455_020--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_006455_020--Hb_005678_030 Hb_000522_030 Hb_000522_030 Hb_006455_020--Hb_000522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0333035 0.0158139 0.0620324 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.158965 0.666604

CAGE analysis