Hb_000567_360

Information

Type -
Description -
Location Contig567: 400111-410682
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23890g
description Cleavage and polyadenylation specificity factor family protein
nr
ID KDO52015.1
description hypothetical protein CISIN_1g004656mg [Citrus sinensis]
swissprot
ID Q9LKF9
description Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
trembl
ID A0A067EDN5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004656mg PE=4 SV=1
Gene Ontology
ID GO:0006396
description cleavage and polyadenylation specificity factor subunit 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_360 0.0 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
2 Hb_003044_100 0.094874654 - - hypothetical protein F383_08446 [Gossypium arboreum]
3 Hb_000915_110 0.0961193445 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
4 Hb_000364_060 0.0968277327 - - JHL03K20.4 [Jatropha curcas]
5 Hb_006064_010 0.0983286776 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
6 Hb_004195_280 0.0987459776 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
7 Hb_002587_020 0.100493145 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001444_010 0.1017299144 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
9 Hb_000679_130 0.102449616 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_002174_060 0.1040711829 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
11 Hb_001266_140 0.1041077032 - - PREDICTED: protein RER1B [Jatropha curcas]
12 Hb_000797_050 0.1055743845 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
13 Hb_030827_030 0.1078245587 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
14 Hb_001983_030 0.1079139025 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
15 Hb_000690_130 0.1082972743 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
16 Hb_000367_130 0.1090187375 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000913_050 0.1100526724 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
18 Hb_000281_100 0.1101480657 - - PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
19 Hb_004198_010 0.1110914526 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
20 Hb_010423_020 0.1113448325 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000567_360 Hb_000567_360 Hb_003044_100 Hb_003044_100 Hb_000567_360--Hb_003044_100 Hb_000915_110 Hb_000915_110 Hb_000567_360--Hb_000915_110 Hb_000364_060 Hb_000364_060 Hb_000567_360--Hb_000364_060 Hb_006064_010 Hb_006064_010 Hb_000567_360--Hb_006064_010 Hb_004195_280 Hb_004195_280 Hb_000567_360--Hb_004195_280 Hb_002587_020 Hb_002587_020 Hb_000567_360--Hb_002587_020 Hb_031939_010 Hb_031939_010 Hb_003044_100--Hb_031939_010 Hb_007026_030 Hb_007026_030 Hb_003044_100--Hb_007026_030 Hb_000012_020 Hb_000012_020 Hb_003044_100--Hb_000012_020 Hb_000290_020 Hb_000290_020 Hb_003044_100--Hb_000290_020 Hb_004198_010 Hb_004198_010 Hb_003044_100--Hb_004198_010 Hb_003044_100--Hb_006064_010 Hb_000606_090 Hb_000606_090 Hb_000915_110--Hb_000606_090 Hb_000705_120 Hb_000705_120 Hb_000915_110--Hb_000705_120 Hb_030131_040 Hb_030131_040 Hb_000915_110--Hb_030131_040 Hb_001444_010 Hb_001444_010 Hb_000915_110--Hb_001444_010 Hb_001341_120 Hb_001341_120 Hb_000915_110--Hb_001341_120 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_000690_130 Hb_000690_130 Hb_006064_010--Hb_000690_130 Hb_003728_080 Hb_003728_080 Hb_006064_010--Hb_003728_080 Hb_000879_200 Hb_000879_200 Hb_006064_010--Hb_000879_200 Hb_011139_030 Hb_011139_030 Hb_006064_010--Hb_011139_030 Hb_006064_010--Hb_007026_030 Hb_009646_030 Hb_009646_030 Hb_006064_010--Hb_009646_030 Hb_004195_280--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_004195_280--Hb_010423_020 Hb_009265_080 Hb_009265_080 Hb_004195_280--Hb_009265_080 Hb_171900_100 Hb_171900_100 Hb_004195_280--Hb_171900_100 Hb_003006_060 Hb_003006_060 Hb_004195_280--Hb_003006_060 Hb_000179_020 Hb_000179_020 Hb_004195_280--Hb_000179_020 Hb_001584_290 Hb_001584_290 Hb_002587_020--Hb_001584_290 Hb_008143_030 Hb_008143_030 Hb_002587_020--Hb_008143_030 Hb_002652_040 Hb_002652_040 Hb_002587_020--Hb_002652_040 Hb_030827_030 Hb_030827_030 Hb_002587_020--Hb_030827_030 Hb_008595_010 Hb_008595_010 Hb_002587_020--Hb_008595_010 Hb_007407_040 Hb_007407_040 Hb_002587_020--Hb_007407_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05385 0.23193 0.738993 0.416096 1.47226 1.81193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.623798 0.660709 0.571883 0.39826 0.597421

CAGE analysis