Hb_000567_410

Information

Type -
Description -
Location Contig567: 434502-436674
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06140g
description POPTRDRAFT_551255; hypothetical protein
nr
ID KDP34390.1
description hypothetical protein JCGZ_12784 [Jatropha curcas]
swissprot
ID P38812
description Phosphatidylglycerophosphatase GEP4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GEP4 PE=1 SV=1
trembl
ID A0A067KQ13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12784 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49160: 434475-436629 , PASA_asmbl_49161: 434426-435832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_410 0.0 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
2 Hb_006478_160 0.0535937161 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
3 Hb_001085_270 0.0692152797 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
4 Hb_000093_110 0.0719002835 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
5 Hb_001085_120 0.0721831624 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
6 Hb_002811_080 0.0763813091 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
7 Hb_005063_050 0.0790531892 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
8 Hb_000265_050 0.0796136332 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
9 Hb_000331_700 0.0812502887 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
10 Hb_000735_040 0.0818291714 - - 60S ribosomal protein L32A [Hevea brasiliensis]
11 Hb_003326_020 0.0821536818 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
12 Hb_000193_120 0.082933189 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
13 Hb_001512_080 0.0850001504 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
14 Hb_001633_030 0.0853229269 - - -
15 Hb_008921_020 0.0855173911 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
16 Hb_000788_010 0.0865325232 - - 40S ribosomal protein S16A [Hevea brasiliensis]
17 Hb_002588_010 0.086609307 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
18 Hb_000731_190 0.0872446521 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
19 Hb_001369_170 0.0879675579 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
20 Hb_002909_130 0.0882456688 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000567_410 Hb_000567_410 Hb_006478_160 Hb_006478_160 Hb_000567_410--Hb_006478_160 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_006478_160--Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_006478_160--Hb_000735_040 Hb_000788_010 Hb_000788_010 Hb_006478_160--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_006478_160--Hb_008921_020 Hb_001369_170 Hb_001369_170 Hb_001085_270--Hb_001369_170 Hb_000061_130 Hb_000061_130 Hb_001085_270--Hb_000061_130 Hb_002909_130 Hb_002909_130 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_000193_120 Hb_000193_120 Hb_001085_270--Hb_000193_120 Hb_000093_110--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000093_110--Hb_002588_010 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_000453_120 Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_000975_320 Hb_000975_320 Hb_002811_080--Hb_000975_320 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_011311_010 Hb_011311_010 Hb_002811_080--Hb_011311_010 Hb_003893_050 Hb_003893_050 Hb_005063_050--Hb_003893_050 Hb_005063_050--Hb_008921_020 Hb_010672_060 Hb_010672_060 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52013 2.3061 3.8837 3.80863 2.94909 3.61857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.17851 20.7509 8.86305 4.34498 3.59161

CAGE analysis