Hb_000568_040

Information

Type -
Description -
Location Contig568: 36798-47882
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03940g
description POPTRDRAFT_563741; MutT/nudix family protein
nr
ID XP_012093254.1
description PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
swissprot
ID Q8GW31
description mRNA-decapping enzyme subunit 2 OS=Arabidopsis thaliana GN=DCP2 PE=1 SV=1
trembl
ID A0A067LJB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20044 PE=4 SV=1
Gene Ontology
ID GO:0016787
description mrna-decapping enzyme subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49189: 37629-37924 , PASA_asmbl_49192: 39963-44616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000568_040 0.0 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
2 Hb_007317_190 0.060580341 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
3 Hb_001040_160 0.0778050723 - - glutaredoxin, grx, putative [Ricinus communis]
4 Hb_000017_340 0.0786399179 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
5 Hb_000370_030 0.0794800703 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
6 Hb_002067_150 0.0828289024 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
7 Hb_001307_140 0.0845208923 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
8 Hb_004608_020 0.0904913232 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
9 Hb_001943_010 0.0928035425 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
10 Hb_000316_030 0.0953085855 - - zinc finger protein, putative [Ricinus communis]
11 Hb_005635_010 0.0964796708 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
12 Hb_016657_010 0.096571638 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
13 Hb_110364_010 0.0977282056 - - gamma-tubulin complex component, putative [Ricinus communis]
14 Hb_001019_170 0.0982320178 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
15 Hb_000703_080 0.0990415319 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
16 Hb_000977_310 0.0990476785 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
17 Hb_000814_090 0.0997193131 - - conserved hypothetical protein [Ricinus communis]
18 Hb_063047_010 0.1002661665 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
19 Hb_006913_040 0.1039087087 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
20 Hb_025012_010 0.1043505607 - - PREDICTED: importin-4 [Vitis vinifera]

Gene co-expression network

sample Hb_000568_040 Hb_000568_040 Hb_007317_190 Hb_007317_190 Hb_000568_040--Hb_007317_190 Hb_001040_160 Hb_001040_160 Hb_000568_040--Hb_001040_160 Hb_000017_340 Hb_000017_340 Hb_000568_040--Hb_000017_340 Hb_000370_030 Hb_000370_030 Hb_000568_040--Hb_000370_030 Hb_002067_150 Hb_002067_150 Hb_000568_040--Hb_002067_150 Hb_001307_140 Hb_001307_140 Hb_000568_040--Hb_001307_140 Hb_006913_040 Hb_006913_040 Hb_007317_190--Hb_006913_040 Hb_004108_140 Hb_004108_140 Hb_007317_190--Hb_004108_140 Hb_002232_170 Hb_002232_170 Hb_007317_190--Hb_002232_170 Hb_000522_090 Hb_000522_090 Hb_007317_190--Hb_000522_090 Hb_016657_010 Hb_016657_010 Hb_007317_190--Hb_016657_010 Hb_000316_030 Hb_000316_030 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_001609_010 Hb_001609_010 Hb_001040_160--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_001040_160--Hb_063047_010 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_004608_020 Hb_004608_020 Hb_000017_340--Hb_004608_020 Hb_005288_120 Hb_005288_120 Hb_000017_340--Hb_005288_120 Hb_000017_340--Hb_000370_030 Hb_000017_340--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000017_340--Hb_000703_080 Hb_000184_130 Hb_000184_130 Hb_000370_030--Hb_000184_130 Hb_000300_280 Hb_000300_280 Hb_000370_030--Hb_000300_280 Hb_000457_060 Hb_000457_060 Hb_000370_030--Hb_000457_060 Hb_004310_060 Hb_004310_060 Hb_000370_030--Hb_004310_060 Hb_000370_030--Hb_000316_030 Hb_005977_090 Hb_005977_090 Hb_002067_150--Hb_005977_090 Hb_007904_220 Hb_007904_220 Hb_002067_150--Hb_007904_220 Hb_000600_070 Hb_000600_070 Hb_002067_150--Hb_000600_070 Hb_005205_020 Hb_005205_020 Hb_002067_150--Hb_005205_020 Hb_002067_150--Hb_025012_010 Hb_110364_010 Hb_110364_010 Hb_001307_140--Hb_110364_010 Hb_001307_140--Hb_063047_010 Hb_001307_140--Hb_001040_160 Hb_000453_270 Hb_000453_270 Hb_001307_140--Hb_000453_270 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.0398 60.0407 13.928 35.2172 100.272 177.207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.682 33.1827 62.2654 69.669 18.2367

CAGE analysis