Hb_000571_010

Information

Type -
Description -
Location Contig571: 3808-14848
Sequence    

Annotation

kegg
ID tcc:TCM_005615
description MIF4G domain-containing protein / MA3 domain-containing protein isoform 1
nr
ID XP_012478326.1
description PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Gossypium raimondii]
swissprot
ID Q4WKB9
description Pre-mRNA-splicing factor cwc22 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc22 PE=3 SV=1
trembl
ID A0A0D2PRP7
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G123200 PE=4 SV=1
Gene Ontology
ID GO:0005488
description pre-mrna-splicing factor cwc22 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000571_010 0.0 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Gossypium raimondii]
2 Hb_102632_010 0.1200823293 - - PREDICTED: CST complex subunit STN1 [Jatropha curcas]
3 Hb_007765_070 0.1908556421 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
4 Hb_000100_130 0.2100981664 - - hypothetical protein VITISV_026702 [Vitis vinifera]
5 Hb_000206_190 0.2162836408 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
6 Hb_048476_150 0.2269481732 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
7 Hb_000160_150 0.2278507958 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
8 Hb_004449_240 0.2288957411 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_002471_180 0.2310424852 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_012404_070 0.2370026999 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
11 Hb_001718_050 0.2430847105 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
12 Hb_001508_020 0.2434562434 - - myosin vIII, putative [Ricinus communis]
13 Hb_000165_140 0.2454448233 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
14 Hb_003895_030 0.2465182425 - - -
15 Hb_007810_100 0.2484494669 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
16 Hb_076233_030 0.2492854845 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
17 Hb_000189_510 0.2497441473 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
18 Hb_028227_010 0.2505080386 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
19 Hb_005656_080 0.2513407072 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
20 Hb_001163_120 0.2518877314 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000571_010 Hb_000571_010 Hb_102632_010 Hb_102632_010 Hb_000571_010--Hb_102632_010 Hb_007765_070 Hb_007765_070 Hb_000571_010--Hb_007765_070 Hb_000100_130 Hb_000100_130 Hb_000571_010--Hb_000100_130 Hb_000206_190 Hb_000206_190 Hb_000571_010--Hb_000206_190 Hb_048476_150 Hb_048476_150 Hb_000571_010--Hb_048476_150 Hb_000160_150 Hb_000160_150 Hb_000571_010--Hb_000160_150 Hb_102632_010--Hb_000206_190 Hb_002307_080 Hb_002307_080 Hb_102632_010--Hb_002307_080 Hb_000077_220 Hb_000077_220 Hb_102632_010--Hb_000077_220 Hb_010712_070 Hb_010712_070 Hb_102632_010--Hb_010712_070 Hb_002471_180 Hb_002471_180 Hb_102632_010--Hb_002471_180 Hb_008511_060 Hb_008511_060 Hb_007765_070--Hb_008511_060 Hb_000270_870 Hb_000270_870 Hb_007765_070--Hb_000270_870 Hb_004724_470 Hb_004724_470 Hb_007765_070--Hb_004724_470 Hb_007765_070--Hb_048476_150 Hb_024836_010 Hb_024836_010 Hb_007765_070--Hb_024836_010 Hb_007765_070--Hb_002471_180 Hb_004374_080 Hb_004374_080 Hb_000100_130--Hb_004374_080 Hb_012404_070 Hb_012404_070 Hb_000100_130--Hb_012404_070 Hb_007810_100 Hb_007810_100 Hb_000100_130--Hb_007810_100 Hb_018954_020 Hb_018954_020 Hb_000100_130--Hb_018954_020 Hb_010925_020 Hb_010925_020 Hb_000100_130--Hb_010925_020 Hb_000850_050 Hb_000850_050 Hb_000100_130--Hb_000850_050 Hb_071869_010 Hb_071869_010 Hb_000206_190--Hb_071869_010 Hb_001050_030 Hb_001050_030 Hb_000206_190--Hb_001050_030 Hb_135442_010 Hb_135442_010 Hb_000206_190--Hb_135442_010 Hb_002154_070 Hb_002154_070 Hb_000206_190--Hb_002154_070 Hb_002863_120 Hb_002863_120 Hb_000206_190--Hb_002863_120 Hb_048476_150--Hb_002471_180 Hb_001021_220 Hb_001021_220 Hb_048476_150--Hb_001021_220 Hb_001163_120 Hb_001163_120 Hb_048476_150--Hb_001163_120 Hb_013726_080 Hb_013726_080 Hb_048476_150--Hb_013726_080 Hb_001377_110 Hb_001377_110 Hb_048476_150--Hb_001377_110 Hb_000031_280 Hb_000031_280 Hb_048476_150--Hb_000031_280 Hb_002708_020 Hb_002708_020 Hb_000160_150--Hb_002708_020 Hb_171619_010 Hb_171619_010 Hb_000160_150--Hb_171619_010 Hb_027402_090 Hb_027402_090 Hb_000160_150--Hb_027402_090 Hb_008246_030 Hb_008246_030 Hb_000160_150--Hb_008246_030 Hb_170532_010 Hb_170532_010 Hb_000160_150--Hb_170532_010 Hb_002686_330 Hb_002686_330 Hb_000160_150--Hb_002686_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.736336 0.442907 1.11421 0.339226 0.383563 1.53435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0408146 0 0.417964 0.0900357 0.332125

CAGE analysis