Hb_000571_030

Information

Type -
Description -
Location Contig571: 20672-25111
Sequence    

Annotation

kegg
ID rcu:RCOM_0488770
description ammonium transporter, putative
nr
ID XP_002530488.1
description ammonium transporter, putative [Ricinus communis]
swissprot
ID Q9M6N7
description Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2
trembl
ID B9SWW9
description Ammonium transporter OS=Ricinus communis GN=RCOM_0488770 PE=3 SV=1
Gene Ontology
ID GO:0016020
description ammonium transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49356: 21427-25112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000571_030 0.0 - - ammonium transporter, putative [Ricinus communis]
2 Hb_000656_350 0.0924818423 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
3 Hb_001619_140 0.093828831 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_000032_150 0.0984090931 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
5 Hb_001257_040 0.0984700204 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
6 Hb_007858_020 0.0992884476 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
7 Hb_029622_080 0.1011533868 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
8 Hb_035677_010 0.1022336982 - - conserved hypothetical protein [Ricinus communis]
9 Hb_032260_100 0.1030503965 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
10 Hb_000422_050 0.1047030632 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
11 Hb_009476_010 0.1118179095 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
12 Hb_097007_020 0.1139000478 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
13 Hb_000836_310 0.114811068 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
14 Hb_004586_120 0.1160153186 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
15 Hb_012496_010 0.1177526489 - - kinase, putative [Ricinus communis]
16 Hb_000340_060 0.1195215876 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001289_030 0.1215222897 - - syntaxin, plant, putative [Ricinus communis]
18 Hb_004032_220 0.1228040304 - - Calmodulin, putative [Ricinus communis]
19 Hb_000247_150 0.1231082048 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
20 Hb_000808_090 0.1231830544 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]

Gene co-expression network

sample Hb_000571_030 Hb_000571_030 Hb_000656_350 Hb_000656_350 Hb_000571_030--Hb_000656_350 Hb_001619_140 Hb_001619_140 Hb_000571_030--Hb_001619_140 Hb_000032_150 Hb_000032_150 Hb_000571_030--Hb_000032_150 Hb_001257_040 Hb_001257_040 Hb_000571_030--Hb_001257_040 Hb_007858_020 Hb_007858_020 Hb_000571_030--Hb_007858_020 Hb_029622_080 Hb_029622_080 Hb_000571_030--Hb_029622_080 Hb_032260_100 Hb_032260_100 Hb_000656_350--Hb_032260_100 Hb_000656_350--Hb_029622_080 Hb_000925_110 Hb_000925_110 Hb_000656_350--Hb_000925_110 Hb_000656_350--Hb_000032_150 Hb_000808_090 Hb_000808_090 Hb_000656_350--Hb_000808_090 Hb_008202_020 Hb_008202_020 Hb_001619_140--Hb_008202_020 Hb_154466_010 Hb_154466_010 Hb_001619_140--Hb_154466_010 Hb_120011_010 Hb_120011_010 Hb_001619_140--Hb_120011_010 Hb_004899_360 Hb_004899_360 Hb_001619_140--Hb_004899_360 Hb_001619_140--Hb_007858_020 Hb_047955_010 Hb_047955_010 Hb_000032_150--Hb_047955_010 Hb_124953_010 Hb_124953_010 Hb_000032_150--Hb_124953_010 Hb_000032_150--Hb_001257_040 Hb_003207_230 Hb_003207_230 Hb_000032_150--Hb_003207_230 Hb_000032_150--Hb_007858_020 Hb_004032_220 Hb_004032_220 Hb_000032_150--Hb_004032_220 Hb_004586_120 Hb_004586_120 Hb_001257_040--Hb_004586_120 Hb_000422_050 Hb_000422_050 Hb_001257_040--Hb_000422_050 Hb_000322_020 Hb_000322_020 Hb_001257_040--Hb_000322_020 Hb_001257_040--Hb_124953_010 Hb_001257_040--Hb_004032_220 Hb_005054_330 Hb_005054_330 Hb_007858_020--Hb_005054_330 Hb_007858_020--Hb_004032_220 Hb_007858_020--Hb_124953_010 Hb_000959_240 Hb_000959_240 Hb_007858_020--Hb_000959_240 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010 Hb_029622_080--Hb_032260_100 Hb_029622_080--Hb_000808_090 Hb_000221_280 Hb_000221_280 Hb_029622_080--Hb_000221_280 Hb_029622_080--Hb_001257_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0574032 61.0343 24.0628 10.8108 0.0337482 0.0301664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0783524 0.287684 0.0776377 1.95653 3.45974

CAGE analysis