Hb_000571_070

Information

Type transcription factor
Description TF Family: G2-like
Location Contig571: 75901-78047
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12940g
description POPTRDRAFT_668090; hypothetical protein
nr
ID XP_012089799.1
description PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID A0A067JG08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00438 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor at1g14600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49357: 75719-77907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000571_070 0.0 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
2 Hb_027751_020 0.0740697517 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
3 Hb_000563_540 0.0855217188 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
4 Hb_000264_190 0.0989232062 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
5 Hb_002609_260 0.1010214692 - - CCCH-type zinc finger protein [Hevea brasiliensis]
6 Hb_002301_320 0.1029396874 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
7 Hb_010931_100 0.1047856322 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
8 Hb_000249_110 0.1063861411 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
9 Hb_011457_100 0.1071597577 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002835_170 0.1076526794 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
11 Hb_116349_150 0.1093385861 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
12 Hb_002301_020 0.110684279 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
13 Hb_005730_020 0.1140148314 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
14 Hb_001476_100 0.1142403634 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002067_160 0.1145387492 - - Protein MLO, putative [Ricinus communis]
16 Hb_000907_100 0.1150556587 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
17 Hb_005488_100 0.1152147341 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
18 Hb_014067_010 0.1209252737 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
19 Hb_000789_190 0.1221172505 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
20 Hb_000270_420 0.1223635427 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000571_070 Hb_000571_070 Hb_027751_020 Hb_027751_020 Hb_000571_070--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_000571_070--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_000571_070--Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_010931_100 Hb_010931_100 Hb_000571_070--Hb_010931_100 Hb_000249_110 Hb_000249_110 Hb_027751_020--Hb_000249_110 Hb_027751_020--Hb_002609_260 Hb_027751_020--Hb_010931_100 Hb_027751_020--Hb_000563_540 Hb_027751_020--Hb_000264_190 Hb_000563_540--Hb_000264_190 Hb_000563_540--Hb_010931_100 Hb_000563_540--Hb_002609_260 Hb_005730_020 Hb_005730_020 Hb_000563_540--Hb_005730_020 Hb_000264_190--Hb_002609_260 Hb_000264_190--Hb_010931_100 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_002609_260--Hb_010931_100 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_001488_100 Hb_001488_100 Hb_002301_320--Hb_001488_100 Hb_002835_170 Hb_002835_170 Hb_002301_320--Hb_002835_170 Hb_103873_010 Hb_103873_010 Hb_002301_320--Hb_103873_010 Hb_002248_050 Hb_002248_050 Hb_002301_320--Hb_002248_050 Hb_003001_030 Hb_003001_030 Hb_002301_320--Hb_003001_030 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_005488_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.585 0.27943 1.19274 2.03274 23.9234 38.2191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9382 20.8597 37.0428 2.33032 1.18601

CAGE analysis