Hb_000571_110

Information

Type -
Description -
Location Contig571: 126387-135487
Sequence    

Annotation

kegg
ID tcc:TCM_021625
description Tetratricopeptide repeat (TPR)-containing protein isoform 1
nr
ID XP_012089798.1
description PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
swissprot
ID O65020
description Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2
trembl
ID A0A067JS70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00437 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ethylene-overproduction protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49358: 126236-134181 , PASA_asmbl_49360: 128939-129198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000571_110 0.0 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
2 Hb_006915_030 0.0695425962 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
3 Hb_000723_130 0.0770182091 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
4 Hb_028089_010 0.0854242017 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
5 Hb_009548_020 0.0860240176 - - structural constituent of cell wall, putative [Ricinus communis]
6 Hb_000723_200 0.0898999501 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
7 Hb_012022_090 0.0939750176 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
8 Hb_002942_100 0.099324277 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
9 Hb_002809_050 0.0999020083 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
10 Hb_000212_310 0.1001381133 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
11 Hb_000050_190 0.1014874109 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002835_370 0.1025401005 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
13 Hb_002311_040 0.1029714422 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
14 Hb_000037_190 0.104083063 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
15 Hb_000646_050 0.1045845492 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
16 Hb_003504_030 0.1060105308 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
17 Hb_000032_100 0.1065821295 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
18 Hb_003976_030 0.1070181187 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
19 Hb_004672_040 0.1079232621 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
20 Hb_001329_140 0.1080129398 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]

Gene co-expression network

sample Hb_000571_110 Hb_000571_110 Hb_006915_030 Hb_006915_030 Hb_000571_110--Hb_006915_030 Hb_000723_130 Hb_000723_130 Hb_000571_110--Hb_000723_130 Hb_028089_010 Hb_028089_010 Hb_000571_110--Hb_028089_010 Hb_009548_020 Hb_009548_020 Hb_000571_110--Hb_009548_020 Hb_000723_200 Hb_000723_200 Hb_000571_110--Hb_000723_200 Hb_012022_090 Hb_012022_090 Hb_000571_110--Hb_012022_090 Hb_001198_100 Hb_001198_100 Hb_006915_030--Hb_001198_100 Hb_002942_100 Hb_002942_100 Hb_006915_030--Hb_002942_100 Hb_006915_030--Hb_000723_130 Hb_006915_030--Hb_009548_020 Hb_004225_050 Hb_004225_050 Hb_006915_030--Hb_004225_050 Hb_002311_040 Hb_002311_040 Hb_000723_130--Hb_002311_040 Hb_000723_130--Hb_009548_020 Hb_000723_130--Hb_002942_100 Hb_000832_020 Hb_000832_020 Hb_000723_130--Hb_000832_020 Hb_002835_370 Hb_002835_370 Hb_028089_010--Hb_002835_370 Hb_028089_010--Hb_009548_020 Hb_001141_020 Hb_001141_020 Hb_028089_010--Hb_001141_020 Hb_004619_030 Hb_004619_030 Hb_028089_010--Hb_004619_030 Hb_000032_100 Hb_000032_100 Hb_028089_010--Hb_000032_100 Hb_188063_020 Hb_188063_020 Hb_028089_010--Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_009548_020--Hb_012022_090 Hb_003976_030 Hb_003976_030 Hb_000723_200--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000723_200--Hb_000092_010 Hb_000723_200--Hb_000723_130 Hb_006017_010 Hb_006017_010 Hb_000723_200--Hb_006017_010 Hb_004204_170 Hb_004204_170 Hb_000723_200--Hb_004204_170 Hb_002811_060 Hb_002811_060 Hb_012022_090--Hb_002811_060 Hb_000213_010 Hb_000213_010 Hb_012022_090--Hb_000213_010 Hb_000116_500 Hb_000116_500 Hb_012022_090--Hb_000116_500 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_012022_090--Hb_002942_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5961 7.60265 6.16002 8.67149 9.04205 10.8676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.82235 3.86527 17.576 7.39935 8.41238

CAGE analysis