Hb_000571_120

Information

Type -
Description -
Location Contig571: 136005-140737
Sequence    

Annotation

kegg
ID rcu:RCOM_0847440
description importin beta-1, putative
nr
ID XP_002526656.1
description importin beta-1, putative [Ricinus communis]
swissprot
ID Q9FJD4
description Importin subunit beta-1 OS=Arabidopsis thaliana GN=KPNB1 PE=1 SV=1
trembl
ID B9SKY7
description Importin beta-1, putative OS=Ricinus communis GN=RCOM_0847440 PE=4 SV=1
Gene Ontology
ID GO:0008536
description importin subunit beta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49361: 136149-140694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000571_120 0.0 - - importin beta-1, putative [Ricinus communis]
2 Hb_002026_180 0.06320411 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
3 Hb_002137_020 0.0663731667 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_007441_200 0.0690840654 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
5 Hb_000953_020 0.0701317157 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
6 Hb_000768_040 0.0772244147 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
7 Hb_000805_020 0.0774448506 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
8 Hb_011883_010 0.0782224155 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
9 Hb_012022_030 0.0795978924 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
10 Hb_004355_020 0.0809848827 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
11 Hb_003464_060 0.0829353391 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
12 Hb_000445_420 0.0835401181 - - protein transporter, putative [Ricinus communis]
13 Hb_039946_020 0.0847667111 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002016_110 0.085125722 - - transducin family protein [Populus trichocarpa]
15 Hb_007441_230 0.0855728924 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
16 Hb_017224_030 0.0859054665 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
17 Hb_000329_630 0.0861810665 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
18 Hb_004223_280 0.0867744771 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
19 Hb_001898_220 0.0871004417 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
20 Hb_004837_040 0.0871850642 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]

Gene co-expression network

sample Hb_000571_120 Hb_000571_120 Hb_002026_180 Hb_002026_180 Hb_000571_120--Hb_002026_180 Hb_002137_020 Hb_002137_020 Hb_000571_120--Hb_002137_020 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000805_020 Hb_000805_020 Hb_000571_120--Hb_000805_020 Hb_000030_300 Hb_000030_300 Hb_002026_180--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080 Hb_004223_280 Hb_004223_280 Hb_002137_020--Hb_004223_280 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_012022_030 Hb_012022_030 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002137_020--Hb_002016_110 Hb_003106_060 Hb_003106_060 Hb_007441_200--Hb_003106_060 Hb_005618_170 Hb_005618_170 Hb_007441_200--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_007441_200--Hb_005305_080 Hb_018838_030 Hb_018838_030 Hb_007441_200--Hb_018838_030 Hb_007441_200--Hb_000805_020 Hb_000953_020--Hb_007416_280 Hb_000510_130 Hb_000510_130 Hb_000953_020--Hb_000510_130 Hb_000953_020--Hb_002026_180 Hb_004032_150 Hb_004032_150 Hb_000953_020--Hb_004032_150 Hb_020956_020 Hb_020956_020 Hb_000953_020--Hb_020956_020 Hb_000768_040--Hb_003464_060 Hb_002603_120 Hb_002603_120 Hb_000768_040--Hb_002603_120 Hb_001021_170 Hb_001021_170 Hb_000768_040--Hb_001021_170 Hb_001226_030 Hb_001226_030 Hb_000768_040--Hb_001226_030 Hb_004684_010 Hb_004684_010 Hb_000768_040--Hb_004684_010 Hb_004355_020 Hb_004355_020 Hb_000768_040--Hb_004355_020 Hb_004907_110 Hb_004907_110 Hb_000805_020--Hb_004907_110 Hb_000805_020--Hb_002026_180 Hb_000805_020--Hb_007441_230 Hb_007416_320 Hb_007416_320 Hb_000805_020--Hb_007416_320 Hb_010883_090 Hb_010883_090 Hb_000805_020--Hb_010883_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.969 11.3743 4.24109 5.64208 7.80465 17.0321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0678 13.0562 14.7505 10.5585 5.65544

CAGE analysis