Hb_000572_050

Information

Type -
Description -
Location Contig572: 85630-94211
Sequence    

Annotation

kegg
ID cam:101514613
description transcriptional adapter ADA2-like
nr
ID XP_004486336.1
description PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
swissprot
ID Q75LL6
description Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2
trembl
ID B9SA80
description Transcriptional adaptor, putative OS=Ricinus communis GN=RCOM_0863470 PE=4 SV=1
Gene Ontology
ID GO:0008270
description transcriptional adapter ada2b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000572_050 0.0 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
2 Hb_005841_030 0.0082745314 - - -
3 Hb_005142_010 0.0125875341 - - -
4 Hb_001403_030 0.034489369 - - -
5 Hb_000971_060 0.0393454993 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000201_020 0.0414270377 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
7 Hb_001545_250 0.0418290342 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
8 Hb_010760_010 0.050795779 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_070247_010 0.0565456097 - - hypothetical protein [Pseudomonas tolaasii]
10 Hb_020818_010 0.0581392184 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
11 Hb_000450_140 0.0605593811 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
12 Hb_012286_070 0.0606581467 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
13 Hb_008839_030 0.0715024862 - - conserved hypothetical protein [Ricinus communis]
14 Hb_060455_010 0.0800615729 - - 50 kDa protein [Hevea brasiliensis]
15 Hb_007177_010 0.118512114 - - -
16 Hb_005020_010 0.1187781837 - - -
17 Hb_004785_010 0.1365598076 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_000638_040 0.1371202515 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
19 Hb_000174_190 0.1405920196 - - unnamed protein product [Coffea canephora]
20 Hb_076908_010 0.1413005088 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_000572_050 Hb_000572_050 Hb_005841_030 Hb_005841_030 Hb_000572_050--Hb_005841_030 Hb_005142_010 Hb_005142_010 Hb_000572_050--Hb_005142_010 Hb_001403_030 Hb_001403_030 Hb_000572_050--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_000572_050--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_000572_050--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_000572_050--Hb_001545_250 Hb_005841_030--Hb_005142_010 Hb_005841_030--Hb_001403_030 Hb_005841_030--Hb_000971_060 Hb_005841_030--Hb_000201_020 Hb_005841_030--Hb_001545_250 Hb_005142_010--Hb_001403_030 Hb_005142_010--Hb_000971_060 Hb_005142_010--Hb_000201_020 Hb_005142_010--Hb_001545_250 Hb_001403_030--Hb_000971_060 Hb_001403_030--Hb_000201_020 Hb_001403_030--Hb_001545_250 Hb_010760_010 Hb_010760_010 Hb_001403_030--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_001403_030--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_001403_030--Hb_020818_010 Hb_000971_060--Hb_000201_020 Hb_000971_060--Hb_001545_250 Hb_000971_060--Hb_010760_010 Hb_000971_060--Hb_070247_010 Hb_000971_060--Hb_020818_010 Hb_000201_020--Hb_001545_250 Hb_000201_020--Hb_010760_010 Hb_000201_020--Hb_070247_010 Hb_000201_020--Hb_020818_010 Hb_001545_250--Hb_010760_010 Hb_001545_250--Hb_070247_010 Hb_001545_250--Hb_020818_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.40144 0.102544 0

CAGE analysis