Hb_000573_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig573: 8820-13406
Sequence    

Annotation

kegg
ID rcu:RCOM_1044460
description receptor histidine kinase, putative
nr
ID XP_002523465.1
description receptor histidine kinase, putative [Ricinus communis]
swissprot
ID Q9ZWS9
description Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=2 SV=1
trembl
ID B9SBU6
description Receptor histidine kinase, putative OS=Ricinus communis GN=RCOM_1044460 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49435: 8496-13411
cDNA
(Sanger)
(ID:Location)		 019_A17.ab1: 8496-13188

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000573_020 0.0 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
2 Hb_000009_170 0.0947175739 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
3 Hb_000436_070 0.1014068365 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
4 Hb_000620_010 0.1015977287 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
5 Hb_001604_010 0.1036276435 - - 14-3-3 protein, putative [Ricinus communis]
6 Hb_001001_060 0.1043832716 - - -
7 Hb_001771_140 0.1047328218 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
8 Hb_000445_420 0.1058711272 - - protein transporter, putative [Ricinus communis]
9 Hb_000190_140 0.1077402112 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
10 Hb_000504_200 0.1097050738 - - hypothetical protein JCGZ_10253 [Jatropha curcas]
11 Hb_000331_210 0.11309975 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
12 Hb_001051_100 0.1150391064 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
13 Hb_001248_130 0.1159439119 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
14 Hb_005699_070 0.1207369773 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
15 Hb_000699_140 0.1220522063 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
16 Hb_002027_120 0.1225402 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
17 Hb_000051_110 0.1228541856 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002253_070 0.123028016 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
19 Hb_000120_950 0.1236469873 - - PREDICTED: protein GRIP [Jatropha curcas]
20 Hb_022181_020 0.123807973 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000573_020 Hb_000573_020 Hb_000009_170 Hb_000009_170 Hb_000573_020--Hb_000009_170 Hb_000436_070 Hb_000436_070 Hb_000573_020--Hb_000436_070 Hb_000620_010 Hb_000620_010 Hb_000573_020--Hb_000620_010 Hb_001604_010 Hb_001604_010 Hb_000573_020--Hb_001604_010 Hb_001001_060 Hb_001001_060 Hb_000573_020--Hb_001001_060 Hb_001771_140 Hb_001771_140 Hb_000573_020--Hb_001771_140 Hb_000009_170--Hb_001001_060 Hb_000009_170--Hb_000620_010 Hb_009838_100 Hb_009838_100 Hb_000009_170--Hb_009838_100 Hb_000120_800 Hb_000120_800 Hb_000009_170--Hb_000120_800 Hb_022137_060 Hb_022137_060 Hb_000009_170--Hb_022137_060 Hb_000331_210 Hb_000331_210 Hb_000009_170--Hb_000331_210 Hb_000120_950 Hb_000120_950 Hb_000436_070--Hb_000120_950 Hb_001051_100 Hb_001051_100 Hb_000436_070--Hb_001051_100 Hb_002027_130 Hb_002027_130 Hb_000436_070--Hb_002027_130 Hb_000436_070--Hb_000620_010 Hb_007908_020 Hb_007908_020 Hb_000436_070--Hb_007908_020 Hb_001248_130 Hb_001248_130 Hb_000436_070--Hb_001248_130 Hb_000620_010--Hb_000120_950 Hb_005662_030 Hb_005662_030 Hb_000620_010--Hb_005662_030 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_000699_140 Hb_000699_140 Hb_000620_010--Hb_000699_140 Hb_007441_120 Hb_007441_120 Hb_001604_010--Hb_007441_120 Hb_015746_010 Hb_015746_010 Hb_001604_010--Hb_015746_010 Hb_028872_140 Hb_028872_140 Hb_001604_010--Hb_028872_140 Hb_001604_010--Hb_001248_130 Hb_001604_010--Hb_000120_950 Hb_001584_330 Hb_001584_330 Hb_001604_010--Hb_001584_330 Hb_004225_020 Hb_004225_020 Hb_001001_060--Hb_004225_020 Hb_001001_060--Hb_000120_800 Hb_004204_020 Hb_004204_020 Hb_001001_060--Hb_004204_020 Hb_000190_140 Hb_000190_140 Hb_001001_060--Hb_000190_140 Hb_002027_120 Hb_002027_120 Hb_001001_060--Hb_002027_120 Hb_002900_190 Hb_002900_190 Hb_001771_140--Hb_002900_190 Hb_007894_140 Hb_007894_140 Hb_001771_140--Hb_007894_140 Hb_000020_190 Hb_000020_190 Hb_001771_140--Hb_000020_190 Hb_006922_100 Hb_006922_100 Hb_001771_140--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001771_140--Hb_001322_190 Hb_010931_120 Hb_010931_120 Hb_001771_140--Hb_010931_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
189.776 46.0524 51.4957 62.7845 102.088 111.407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
157.264 66.3107 188.935 101.847 26.6303

CAGE analysis