Hb_000573_040

Information

Type -
Description -
Location Contig573: 30277-50769
Sequence    

Annotation

kegg
ID vvi:100255051
description dynamin-2A
nr
ID KDP28973.1
description hypothetical protein JCGZ_19524 [Jatropha curcas]
swissprot
ID Q9LQ55
description Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
trembl
ID A0A067K1P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19524 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-like protein 6 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49438: 30291-50742 , PASA_asmbl_49439: 48047-48578 , PASA_asmbl_49440: 49218-49520 , PASA_asmbl_49442: 46086-46310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000573_040 0.0 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
2 Hb_002025_140 0.0481810989 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
3 Hb_000684_180 0.0722292584 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
4 Hb_000134_360 0.0734716764 - - PREDICTED: protein gar2 [Jatropha curcas]
5 Hb_000212_280 0.0758014787 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
6 Hb_005028_010 0.0787091161 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
7 Hb_004531_090 0.0818264595 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
8 Hb_012760_200 0.0829653274 - - protein phsophatase-2a, putative [Ricinus communis]
9 Hb_001034_020 0.0839230074 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
10 Hb_174865_050 0.0842034628 - - PREDICTED: neuroguidin [Jatropha curcas]
11 Hb_004032_350 0.0871966773 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
12 Hb_000331_480 0.088468017 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
13 Hb_002374_150 0.0885840161 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
14 Hb_000631_150 0.088951845 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
15 Hb_000173_370 0.0897859972 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
16 Hb_002675_190 0.0912342605 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_003216_110 0.0913393036 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
18 Hb_003666_050 0.0917806582 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
19 Hb_113216_010 0.0918426151 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
20 Hb_153547_010 0.0931518354 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000573_040 Hb_000573_040 Hb_002025_140 Hb_002025_140 Hb_000573_040--Hb_002025_140 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_000573_040--Hb_000212_280 Hb_005028_010 Hb_005028_010 Hb_000573_040--Hb_005028_010 Hb_004531_090 Hb_004531_090 Hb_000573_040--Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_000631_150 Hb_000631_150 Hb_000684_180--Hb_000631_150 Hb_003352_050 Hb_003352_050 Hb_000684_180--Hb_003352_050 Hb_000684_180--Hb_000134_360 Hb_011644_020 Hb_011644_020 Hb_000684_180--Hb_011644_020 Hb_001195_030 Hb_001195_030 Hb_000684_180--Hb_001195_030 Hb_000134_360--Hb_000631_150 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_008528_010 Hb_008528_010 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100 Hb_025048_040 Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_000212_280--Hb_005000_270 Hb_000212_280--Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_005028_010--Hb_012760_200 Hb_000640_210 Hb_000640_210 Hb_005028_010--Hb_000640_210 Hb_005028_010--Hb_025048_040 Hb_001140_080 Hb_001140_080 Hb_005028_010--Hb_001140_080 Hb_000779_040 Hb_000779_040 Hb_004531_090--Hb_000779_040 Hb_000291_120 Hb_000291_120 Hb_004531_090--Hb_000291_120 Hb_000211_090 Hb_000211_090 Hb_004531_090--Hb_000211_090 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
321.393 83.4742 30.065 29.8135 358.465 339.941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
155.517 40.8361 104.687 59.7245 32.2368

CAGE analysis