Hb_000573_060

Information

Type -
Description -
Location Contig573: 60457-72933
Sequence    

Annotation

kegg
ID rcu:RCOM_1045170
description ligatin, putative
nr
ID XP_012079693.1
description PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
swissprot
ID Q5PPG7
description Eukaryotic translation initiation factor 2D OS=Rattus norvegicus GN=Eif2d PE=2 SV=1
trembl
ID A0A067KH41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14805 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 2d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49443: 62101-62331 , PASA_asmbl_49444: 63679-69117 , PASA_asmbl_49445: 63740-64590 , PASA_asmbl_49446: 69252-72255 , PASA_asmbl_49447: 69252-72992 , PASA_asmbl_49448: 69252-72594
cDNA
(Sanger)
(ID:Location)		 025_N01.ab1: 71086-72255

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000573_060 0.0 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
2 Hb_002641_130 0.0520884627 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
3 Hb_001244_150 0.0649166193 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
4 Hb_000086_150 0.0702733869 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
5 Hb_000260_560 0.0741946102 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
6 Hb_009486_080 0.074221874 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
7 Hb_001001_150 0.0782372009 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002350_010 0.0841641485 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
9 Hb_001454_170 0.0864070827 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
10 Hb_000343_110 0.0885773493 - - Heat shock 70 kDa protein, putative [Ricinus communis]
11 Hb_000579_010 0.0905255341 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
12 Hb_001191_120 0.0914811399 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
13 Hb_002636_110 0.0935731256 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
14 Hb_007305_020 0.0942774327 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
15 Hb_001318_070 0.0943939916 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
16 Hb_027472_220 0.0955587182 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
17 Hb_000243_210 0.095577525 - - protein with unknown function [Ricinus communis]
18 Hb_000671_070 0.0964792899 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
19 Hb_000176_100 0.0967610695 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
20 Hb_001673_050 0.0985577055 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000573_060 Hb_000573_060 Hb_002641_130 Hb_002641_130 Hb_000573_060--Hb_002641_130 Hb_001244_150 Hb_001244_150 Hb_000573_060--Hb_001244_150 Hb_000086_150 Hb_000086_150 Hb_000573_060--Hb_000086_150 Hb_000260_560 Hb_000260_560 Hb_000573_060--Hb_000260_560 Hb_009486_080 Hb_009486_080 Hb_000573_060--Hb_009486_080 Hb_001001_150 Hb_001001_150 Hb_000573_060--Hb_001001_150 Hb_002641_130--Hb_001244_150 Hb_000563_130 Hb_000563_130 Hb_002641_130--Hb_000563_130 Hb_002641_130--Hb_009486_080 Hb_002641_130--Hb_001001_150 Hb_002641_130--Hb_000086_150 Hb_002233_130 Hb_002233_130 Hb_001244_150--Hb_002233_130 Hb_004324_330 Hb_004324_330 Hb_001244_150--Hb_004324_330 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_000608_300 Hb_000608_300 Hb_001244_150--Hb_000608_300 Hb_007305_020 Hb_007305_020 Hb_000086_150--Hb_007305_020 Hb_000086_150--Hb_009486_080 Hb_003124_160 Hb_003124_160 Hb_000086_150--Hb_003124_160 Hb_000086_150--Hb_000260_560 Hb_000958_070 Hb_000958_070 Hb_000260_560--Hb_000958_070 Hb_000260_560--Hb_002233_130 Hb_000260_560--Hb_001244_150 Hb_000260_560--Hb_009486_080 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_001454_170 Hb_001454_170 Hb_009486_080--Hb_001454_170 Hb_146224_010 Hb_146224_010 Hb_001001_150--Hb_146224_010 Hb_000035_170 Hb_000035_170 Hb_001001_150--Hb_000035_170 Hb_000473_110 Hb_000473_110 Hb_001001_150--Hb_000473_110 Hb_001318_070 Hb_001318_070 Hb_001001_150--Hb_001318_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.73147 17.8457 13.1873 8.50535 20.7827 11.3329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.81062 5.54423 7.82977 12.3354 17.2779

CAGE analysis