Hb_000573_070

Information

Type -
Description -
Location Contig573: 77116-78651
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09900g
description hypothetical protein
nr
ID KDP31583.1
description hypothetical protein JCGZ_14808 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067K982
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14808 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000573_070 0.0 - - hypothetical protein JCGZ_14808 [Jatropha curcas]
2 Hb_001377_150 0.0841722059 - - hypothetical protein JCGZ_14266 [Jatropha curcas]
3 Hb_004204_070 0.0910504403 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
4 Hb_010449_020 0.0936624593 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
5 Hb_010661_030 0.0987042872 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
6 Hb_002272_250 0.0989343883 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000000_160 0.0996777679 - - PREDICTED: membrin-11 [Jatropha curcas]
8 Hb_000933_180 0.0997133178 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
9 Hb_000023_230 0.1010741935 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
10 Hb_002893_060 0.1028088877 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
11 Hb_011360_140 0.1030162249 - - 40S ribosomal protein S19, putative [Ricinus communis]
12 Hb_011794_090 0.1034208295 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
13 Hb_001405_050 0.1061730939 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
14 Hb_000494_020 0.1082200263 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
15 Hb_000107_050 0.1089090155 - - 60S ribosomal protein L9, putative [Ricinus communis]
16 Hb_000768_050 0.1117820047 - - hypothetical protein RCOM_0845740 [Ricinus communis]
17 Hb_023226_040 0.1136272755 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
18 Hb_002968_060 0.1143110046 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
19 Hb_001404_100 0.1143261329 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
20 Hb_000392_440 0.1146244262 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000573_070 Hb_000573_070 Hb_001377_150 Hb_001377_150 Hb_000573_070--Hb_001377_150 Hb_004204_070 Hb_004204_070 Hb_000573_070--Hb_004204_070 Hb_010449_020 Hb_010449_020 Hb_000573_070--Hb_010449_020 Hb_010661_030 Hb_010661_030 Hb_000573_070--Hb_010661_030 Hb_002272_250 Hb_002272_250 Hb_000573_070--Hb_002272_250 Hb_000000_160 Hb_000000_160 Hb_000573_070--Hb_000000_160 Hb_002893_060 Hb_002893_060 Hb_001377_150--Hb_002893_060 Hb_004297_070 Hb_004297_070 Hb_001377_150--Hb_004297_070 Hb_003018_120 Hb_003018_120 Hb_001377_150--Hb_003018_120 Hb_002518_050 Hb_002518_050 Hb_001377_150--Hb_002518_050 Hb_000933_180 Hb_000933_180 Hb_001377_150--Hb_000933_180 Hb_011794_090 Hb_011794_090 Hb_004204_070--Hb_011794_090 Hb_004204_070--Hb_002272_250 Hb_004994_170 Hb_004994_170 Hb_004204_070--Hb_004994_170 Hb_000141_060 Hb_000141_060 Hb_004204_070--Hb_000141_060 Hb_004204_070--Hb_010661_030 Hb_001404_100 Hb_001404_100 Hb_004204_070--Hb_001404_100 Hb_003185_020 Hb_003185_020 Hb_010449_020--Hb_003185_020 Hb_000392_270 Hb_000392_270 Hb_010449_020--Hb_000392_270 Hb_000768_050 Hb_000768_050 Hb_010449_020--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_010449_020--Hb_003688_100 Hb_005489_130 Hb_005489_130 Hb_010449_020--Hb_005489_130 Hb_004722_060 Hb_004722_060 Hb_010449_020--Hb_004722_060 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_000032_570 Hb_000032_570 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_002272_250--Hb_011794_090 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_000017_120 Hb_000017_120 Hb_002272_250--Hb_000017_120 Hb_150069_020 Hb_150069_020 Hb_002272_250--Hb_150069_020 Hb_002007_060 Hb_002007_060 Hb_000000_160--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000000_160--Hb_023226_040 Hb_000661_250 Hb_000661_250 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.18394 1.64421 2.69678 0.900563 3.50639 5.53674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27588 6.80486 2.72894 2.4166 1.0444

CAGE analysis