Hb_000574_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig574: 10011-13184
Sequence    

Annotation

kegg
ID cic:CICLE_v10024873mg
description hypothetical protein
nr
ID KDP37040.1
description hypothetical protein JCGZ_06096 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067KXN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06096 PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49531: 9332-10378 , PASA_asmbl_49534: 12149-13328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
2 Hb_002701_060 0.089198264 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008143_010 0.0987717699 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
4 Hb_005575_010 0.1083604867 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
5 Hb_010678_010 0.1128238118 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
6 Hb_006053_020 0.1149280484 - - CAP [Theobroma cacao]
7 Hb_015978_090 0.117401583 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
8 Hb_006970_120 0.1222924283 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002701_170 0.123317113 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
10 Hb_012807_030 0.1268860197 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
11 Hb_067558_010 0.1275814559 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_000675_010 0.1316302162 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
13 Hb_039435_020 0.137383738 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
14 Hb_024570_030 0.1375648504 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000041_210 0.1380269798 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
16 Hb_000164_110 0.1385098618 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
17 Hb_000947_010 0.1389725958 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_004374_020 0.1409115961 - - PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
19 Hb_000483_430 0.1420170425 - - -
20 Hb_005181_190 0.1439436831 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_010 Hb_000574_010 Hb_002701_060 Hb_002701_060 Hb_000574_010--Hb_002701_060 Hb_008143_010 Hb_008143_010 Hb_000574_010--Hb_008143_010 Hb_005575_010 Hb_005575_010 Hb_000574_010--Hb_005575_010 Hb_010678_010 Hb_010678_010 Hb_000574_010--Hb_010678_010 Hb_006053_020 Hb_006053_020 Hb_000574_010--Hb_006053_020 Hb_015978_090 Hb_015978_090 Hb_000574_010--Hb_015978_090 Hb_002701_060--Hb_006053_020 Hb_002701_170 Hb_002701_170 Hb_002701_060--Hb_002701_170 Hb_000072_110 Hb_000072_110 Hb_002701_060--Hb_000072_110 Hb_006970_120 Hb_006970_120 Hb_002701_060--Hb_006970_120 Hb_039435_020 Hb_039435_020 Hb_002701_060--Hb_039435_020 Hb_002762_050 Hb_002762_050 Hb_008143_010--Hb_002762_050 Hb_012807_030 Hb_012807_030 Hb_008143_010--Hb_012807_030 Hb_000675_010 Hb_000675_010 Hb_008143_010--Hb_000675_010 Hb_003536_020 Hb_003536_020 Hb_008143_010--Hb_003536_020 Hb_000483_430 Hb_000483_430 Hb_008143_010--Hb_000483_430 Hb_003453_060 Hb_003453_060 Hb_005575_010--Hb_003453_060 Hb_000947_010 Hb_000947_010 Hb_005575_010--Hb_000947_010 Hb_003043_130 Hb_003043_130 Hb_005575_010--Hb_003043_130 Hb_002025_290 Hb_002025_290 Hb_005575_010--Hb_002025_290 Hb_078582_010 Hb_078582_010 Hb_005575_010--Hb_078582_010 Hb_003119_130 Hb_003119_130 Hb_005575_010--Hb_003119_130 Hb_010678_010--Hb_002701_170 Hb_000560_060 Hb_000560_060 Hb_010678_010--Hb_000560_060 Hb_005622_030 Hb_005622_030 Hb_010678_010--Hb_005622_030 Hb_002151_150 Hb_002151_150 Hb_010678_010--Hb_002151_150 Hb_004837_250 Hb_004837_250 Hb_010678_010--Hb_004837_250 Hb_006053_020--Hb_039435_020 Hb_002122_070 Hb_002122_070 Hb_006053_020--Hb_002122_070 Hb_006053_020--Hb_006970_120 Hb_067558_010 Hb_067558_010 Hb_006053_020--Hb_067558_010 Hb_006053_020--Hb_000072_110 Hb_015978_090--Hb_008143_010 Hb_006147_020 Hb_006147_020 Hb_015978_090--Hb_006147_020 Hb_004242_200 Hb_004242_200 Hb_015978_090--Hb_004242_200 Hb_001300_240 Hb_001300_240 Hb_015978_090--Hb_001300_240 Hb_015978_090--Hb_039435_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.160841 2.11354 0.493486 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0128077 0 0.803161 2.91781

CAGE analysis