Hb_000574_020

Information

Type -
Description -
Location Contig574: 14784-15392
Sequence    

Annotation

kegg
ID rcu:RCOM_1512760
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002511467.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9S7R4
description Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
trembl
ID B9R8Z2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1512760 PE=4 SV=1
Gene Ontology
ID GO:0008380
description pentatricopeptide repeat-containing protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_006275_030 0.0030655586 - - -
3 Hb_002463_080 0.0077645471 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_003556_020 0.0110073422 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
5 Hb_012194_010 0.0252527098 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
6 Hb_005741_010 0.0378453381 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
7 Hb_004458_050 0.0425882827 - - -
8 Hb_011360_100 0.0565649262 - - -
9 Hb_010222_010 0.0586007059 - - -
10 Hb_000188_090 0.0618821741 - - JHL22C18.10 [Jatropha curcas]
11 Hb_000934_220 0.0676163072 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
12 Hb_059069_010 0.0732442204 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
13 Hb_038675_010 0.0743624613 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
14 Hb_001887_030 0.0875269773 - - -
15 Hb_044767_010 0.0905560262 - - -
16 Hb_066620_010 0.0934245547 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
17 Hb_012587_010 0.1010907331 - - -
18 Hb_003985_020 0.105026181 - - -
19 Hb_003017_010 0.1077257383 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
20 Hb_002257_070 0.1086984048 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_000574_020 Hb_000574_020 Hb_006275_030 Hb_006275_030 Hb_000574_020--Hb_006275_030 Hb_002463_080 Hb_002463_080 Hb_000574_020--Hb_002463_080 Hb_003556_020 Hb_003556_020 Hb_000574_020--Hb_003556_020 Hb_012194_010 Hb_012194_010 Hb_000574_020--Hb_012194_010 Hb_005741_010 Hb_005741_010 Hb_000574_020--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_000574_020--Hb_004458_050 Hb_006275_030--Hb_002463_080 Hb_006275_030--Hb_003556_020 Hb_006275_030--Hb_012194_010 Hb_006275_030--Hb_005741_010 Hb_006275_030--Hb_004458_050 Hb_002463_080--Hb_003556_020 Hb_002463_080--Hb_012194_010 Hb_002463_080--Hb_005741_010 Hb_002463_080--Hb_004458_050 Hb_003556_020--Hb_012194_010 Hb_010222_010 Hb_010222_010 Hb_003556_020--Hb_010222_010 Hb_003556_020--Hb_005741_010 Hb_012194_010--Hb_005741_010 Hb_012194_010--Hb_004458_050 Hb_011360_100 Hb_011360_100 Hb_012194_010--Hb_011360_100 Hb_005741_010--Hb_004458_050 Hb_005741_010--Hb_011360_100 Hb_059069_010 Hb_059069_010 Hb_005741_010--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_005741_010--Hb_038675_010 Hb_004458_050--Hb_011360_100 Hb_004458_050--Hb_059069_010 Hb_004458_050--Hb_038675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0425659 0 0 0 0 0.0623983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis