Hb_000574_030

Information

Type desease resistance
Description Gene Name: Glyco_hydro_38
Location Contig574: 35718-39297
Sequence    

Annotation

kegg
ID rcu:RCOM_0895260
description Disease resistance protein RPS5, putative (EC:3.1.3.16)
nr
ID XP_002517530.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID O64973
description Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2
trembl
ID B9RUW1
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0895260 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49535: 37965-38200 , PASA_asmbl_49536: 38674-39209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_030 0.0 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_002016_130 0.0861912021 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
3 Hb_001005_040 0.1251021641 - - -
4 Hb_004487_060 0.1260426195 - - cytochrome P450, putative [Ricinus communis]
5 Hb_009848_060 0.1513224888 - - unknown [Glycine max]
6 Hb_001288_050 0.159446593 - - -
7 Hb_020831_070 0.1601095525 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_005595_030 0.1625826185 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
9 Hb_001301_010 0.1636128768 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_000416_010 0.1697682762 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
11 Hb_001856_280 0.1698348589 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_001571_020 0.1760638638 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
13 Hb_000318_400 0.1769630018 - - conserved hypothetical protein [Ricinus communis]
14 Hb_064106_010 0.1780679037 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
15 Hb_004520_010 0.1824994295 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
16 Hb_002876_100 0.183273416 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
17 Hb_000567_150 0.183962471 - - cysteine protease, putative [Ricinus communis]
18 Hb_043792_030 0.1853272422 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
19 Hb_001880_020 0.1931597776 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
20 Hb_030885_010 0.1934936565 - - -

Gene co-expression network

sample Hb_000574_030 Hb_000574_030 Hb_002016_130 Hb_002016_130 Hb_000574_030--Hb_002016_130 Hb_001005_040 Hb_001005_040 Hb_000574_030--Hb_001005_040 Hb_004487_060 Hb_004487_060 Hb_000574_030--Hb_004487_060 Hb_009848_060 Hb_009848_060 Hb_000574_030--Hb_009848_060 Hb_001288_050 Hb_001288_050 Hb_000574_030--Hb_001288_050 Hb_020831_070 Hb_020831_070 Hb_000574_030--Hb_020831_070 Hb_002016_130--Hb_001005_040 Hb_002016_130--Hb_004487_060 Hb_002016_130--Hb_001288_050 Hb_000416_010 Hb_000416_010 Hb_002016_130--Hb_000416_010 Hb_001301_010 Hb_001301_010 Hb_002016_130--Hb_001301_010 Hb_001005_040--Hb_001288_050 Hb_029727_010 Hb_029727_010 Hb_001005_040--Hb_029727_010 Hb_000567_150 Hb_000567_150 Hb_001005_040--Hb_000567_150 Hb_001005_040--Hb_000416_010 Hb_001109_170 Hb_001109_170 Hb_001005_040--Hb_001109_170 Hb_110737_010 Hb_110737_010 Hb_004487_060--Hb_110737_010 Hb_004487_060--Hb_001288_050 Hb_004487_060--Hb_001005_040 Hb_004487_060--Hb_000567_150 Hb_000260_730 Hb_000260_730 Hb_009848_060--Hb_000260_730 Hb_009848_060--Hb_002016_130 Hb_030885_010 Hb_030885_010 Hb_009848_060--Hb_030885_010 Hb_004052_060 Hb_004052_060 Hb_009848_060--Hb_004052_060 Hb_009848_050 Hb_009848_050 Hb_009848_060--Hb_009848_050 Hb_001288_050--Hb_000567_150 Hb_000751_070 Hb_000751_070 Hb_001288_050--Hb_000751_070 Hb_001597_090 Hb_001597_090 Hb_001288_050--Hb_001597_090 Hb_001571_020 Hb_001571_020 Hb_001288_050--Hb_001571_020 Hb_006455_020 Hb_006455_020 Hb_020831_070--Hb_006455_020 Hb_043792_030 Hb_043792_030 Hb_020831_070--Hb_043792_030 Hb_001856_280 Hb_001856_280 Hb_020831_070--Hb_001856_280 Hb_019654_170 Hb_019654_170 Hb_020831_070--Hb_019654_170 Hb_035651_010 Hb_035651_010 Hb_020831_070--Hb_035651_010 Hb_003311_020 Hb_003311_020 Hb_020831_070--Hb_003311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00657696 0.0660581 0.207078 0.0522798 0 0.00610814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.465612 0.851051

CAGE analysis