Hb_000574_070

Information

Type -
Description -
Location Contig574: 67965-68867
Sequence    

Annotation

kegg
ID tcc:TCM_044716
description DEAD-box ATP-dependent RNA helicase 35 isoform 1
nr
ID XP_012073120.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
swissprot
ID A7TTT5
description ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP2 PE=3 SV=1
trembl
ID A0A067KLM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06098 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49540: 67770-82566 , PASA_asmbl_49541: 65918-82599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_070 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
2 Hb_001472_090 0.0696553941 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
3 Hb_003488_030 0.0809659245 - - PREDICTED: protein CPR-5 [Jatropha curcas]
4 Hb_001700_040 0.0830333226 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
5 Hb_000544_050 0.0832344484 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
6 Hb_001913_060 0.0837886523 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
7 Hb_010417_050 0.0844136501 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
8 Hb_000922_370 0.0848987963 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
9 Hb_000574_100 0.0856835686 - - DEAD-box protein abstrakt [Populus trichocarpa]
10 Hb_004228_010 0.0857630305 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
11 Hb_000183_020 0.0859165814 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
12 Hb_014267_010 0.0868722819 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
13 Hb_000613_080 0.0890993133 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
14 Hb_003044_020 0.0891121374 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
15 Hb_004117_310 0.0895106684 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
16 Hb_009476_040 0.0919652264 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002400_240 0.0935120298 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
18 Hb_003966_030 0.09435166 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
19 Hb_001199_100 0.0946450373 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
20 Hb_000540_060 0.0988737743 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_070 Hb_000574_070 Hb_001472_090 Hb_001472_090 Hb_000574_070--Hb_001472_090 Hb_003488_030 Hb_003488_030 Hb_000574_070--Hb_003488_030 Hb_001700_040 Hb_001700_040 Hb_000574_070--Hb_001700_040 Hb_000544_050 Hb_000544_050 Hb_000574_070--Hb_000544_050 Hb_001913_060 Hb_001913_060 Hb_000574_070--Hb_001913_060 Hb_010417_050 Hb_010417_050 Hb_000574_070--Hb_010417_050 Hb_004228_010 Hb_004228_010 Hb_001472_090--Hb_004228_010 Hb_000803_260 Hb_000803_260 Hb_001472_090--Hb_000803_260 Hb_014267_010 Hb_014267_010 Hb_001472_090--Hb_014267_010 Hb_000684_250 Hb_000684_250 Hb_001472_090--Hb_000684_250 Hb_000540_060 Hb_000540_060 Hb_001472_090--Hb_000540_060 Hb_000127_040 Hb_000127_040 Hb_003488_030--Hb_000127_040 Hb_000166_130 Hb_000166_130 Hb_003488_030--Hb_000166_130 Hb_003029_110 Hb_003029_110 Hb_003488_030--Hb_003029_110 Hb_000201_110 Hb_000201_110 Hb_003488_030--Hb_000201_110 Hb_003966_030 Hb_003966_030 Hb_003488_030--Hb_003966_030 Hb_000457_260 Hb_000457_260 Hb_001700_040--Hb_000457_260 Hb_000318_510 Hb_000318_510 Hb_001700_040--Hb_000318_510 Hb_000283_070 Hb_000283_070 Hb_001700_040--Hb_000283_070 Hb_000878_010 Hb_000878_010 Hb_001700_040--Hb_000878_010 Hb_005679_050 Hb_005679_050 Hb_001700_040--Hb_005679_050 Hb_000101_240 Hb_000101_240 Hb_001700_040--Hb_000101_240 Hb_085781_020 Hb_085781_020 Hb_000544_050--Hb_085781_020 Hb_000544_050--Hb_001913_060 Hb_003060_060 Hb_003060_060 Hb_000544_050--Hb_003060_060 Hb_001357_270 Hb_001357_270 Hb_000544_050--Hb_001357_270 Hb_000723_220 Hb_000723_220 Hb_000544_050--Hb_000723_220 Hb_002784_110 Hb_002784_110 Hb_001913_060--Hb_002784_110 Hb_001821_090 Hb_001821_090 Hb_001913_060--Hb_001821_090 Hb_002400_240 Hb_002400_240 Hb_001913_060--Hb_002400_240 Hb_002107_070 Hb_002107_070 Hb_001913_060--Hb_002107_070 Hb_000446_120 Hb_000446_120 Hb_001913_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_001913_060--Hb_002329_040 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_010417_050--Hb_014267_010 Hb_010417_050--Hb_004228_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_010417_050--Hb_000101_240 Hb_010417_050--Hb_001700_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1852 36.0184 9.18206 20.0603 27.3496 54.8196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6404 12.6467 29.7364 27.3799 22.4486

CAGE analysis