Hb_000574_090

Information

Type -
Description -
Location Contig574: 77626-80079
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_010646031.1
description PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B326
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_090 0.0 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
2 Hb_172426_010 0.1607904415 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
3 Hb_000236_430 0.1622195968 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
4 Hb_034013_010 0.1711758551 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
5 Hb_001205_170 0.1833996063 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
6 Hb_004007_230 0.1849202254 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
7 Hb_002110_110 0.1862696285 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
8 Hb_002871_170 0.189106192 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
9 Hb_004994_200 0.1907206416 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
10 Hb_004884_210 0.1943631188 - - PREDICTED: mitoferrin-like [Jatropha curcas]
11 Hb_003106_250 0.1969978616 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
12 Hb_000112_040 0.1994755158 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_026053_030 0.2035686019 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
14 Hb_010055_020 0.2055027065 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
15 Hb_071130_020 0.2056862451 - - -
16 Hb_002395_020 0.2082124154 - - Protein CREG1 precursor, putative [Ricinus communis]
17 Hb_000044_050 0.2083153591 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
18 Hb_000417_150 0.2090442153 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
19 Hb_004976_080 0.2095147128 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
20 Hb_002045_220 0.2103030298 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_090 Hb_000574_090 Hb_172426_010 Hb_172426_010 Hb_000574_090--Hb_172426_010 Hb_000236_430 Hb_000236_430 Hb_000574_090--Hb_000236_430 Hb_034013_010 Hb_034013_010 Hb_000574_090--Hb_034013_010 Hb_001205_170 Hb_001205_170 Hb_000574_090--Hb_001205_170 Hb_004007_230 Hb_004007_230 Hb_000574_090--Hb_004007_230 Hb_002110_110 Hb_002110_110 Hb_000574_090--Hb_002110_110 Hb_000417_150 Hb_000417_150 Hb_172426_010--Hb_000417_150 Hb_004994_200 Hb_004994_200 Hb_172426_010--Hb_004994_200 Hb_172426_010--Hb_000236_430 Hb_004884_210 Hb_004884_210 Hb_172426_010--Hb_004884_210 Hb_027337_050 Hb_027337_050 Hb_172426_010--Hb_027337_050 Hb_172426_010--Hb_001205_170 Hb_026053_030 Hb_026053_030 Hb_000236_430--Hb_026053_030 Hb_000236_430--Hb_000417_150 Hb_008195_020 Hb_008195_020 Hb_000236_430--Hb_008195_020 Hb_003727_060 Hb_003727_060 Hb_000236_430--Hb_003727_060 Hb_004063_010 Hb_004063_010 Hb_000236_430--Hb_004063_010 Hb_002871_170 Hb_002871_170 Hb_034013_010--Hb_002871_170 Hb_034013_010--Hb_004884_210 Hb_010055_020 Hb_010055_020 Hb_034013_010--Hb_010055_020 Hb_000002_090 Hb_000002_090 Hb_034013_010--Hb_000002_090 Hb_001989_080 Hb_001989_080 Hb_034013_010--Hb_001989_080 Hb_000112_040 Hb_000112_040 Hb_034013_010--Hb_000112_040 Hb_001999_050 Hb_001999_050 Hb_001205_170--Hb_001999_050 Hb_001205_170--Hb_004884_210 Hb_007575_020 Hb_007575_020 Hb_001205_170--Hb_007575_020 Hb_001205_170--Hb_027337_050 Hb_001205_170--Hb_034013_010 Hb_004007_230--Hb_026053_030 Hb_001357_360 Hb_001357_360 Hb_004007_230--Hb_001357_360 Hb_004143_140 Hb_004143_140 Hb_004007_230--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_004007_230--Hb_000044_050 Hb_003077_140 Hb_003077_140 Hb_004007_230--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_004007_230--Hb_000767_010 Hb_000032_020 Hb_000032_020 Hb_002110_110--Hb_000032_020 Hb_005542_010 Hb_005542_010 Hb_002110_110--Hb_005542_010 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_010565_030 Hb_010565_030 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.49901 0.0942446 0.0458166 0 0.0122535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0282382 0.0222167 0 0.097437 0.46641

CAGE analysis