Hb_000574_100

Information

Type -
Description -
Location Contig574: 81107-82442
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23270g
description DEAD-box protein abstrakt
nr
ID XP_006385035.1
description DEAD-box protein abstrakt [Populus trichocarpa]
swissprot
ID Q9LU46
description DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1
trembl
ID B9N0D8
description DEAD-box protein abstrakt OS=Populus trichocarpa GN=POPTR_0004s23270g PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49540: 67770-82566 , PASA_asmbl_49541: 65918-82599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_100 0.0 - - DEAD-box protein abstrakt [Populus trichocarpa]
2 Hb_002615_090 0.0779778609 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
3 Hb_000922_370 0.0794029883 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
4 Hb_001472_090 0.0839251901 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_000941_130 0.0845678493 - - gamma-tubulin complex component, putative [Ricinus communis]
6 Hb_000574_070 0.0856835686 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
7 Hb_000878_180 0.0867531988 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
8 Hb_007426_130 0.0877973801 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
9 Hb_093432_010 0.0899861419 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
10 Hb_001054_030 0.0902280888 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
11 Hb_003729_030 0.0924733546 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
12 Hb_000120_660 0.0928049631 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
13 Hb_157966_010 0.0930068881 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
14 Hb_002890_090 0.0948009999 - - Auxin response factor 1 [Glycine soja]
15 Hb_009615_170 0.0949272387 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
16 Hb_002111_070 0.0951831959 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
17 Hb_000291_090 0.0951949776 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X2 [Jatropha curcas]
18 Hb_000780_170 0.0952667823 - - PREDICTED: OBERON-like protein [Jatropha curcas]
19 Hb_000680_090 0.0953812289 - - Protein SEY1, putative [Ricinus communis]
20 Hb_074969_010 0.0954782208 - - hypothetical protein JCGZ_23339 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_100 Hb_000574_100 Hb_002615_090 Hb_002615_090 Hb_000574_100--Hb_002615_090 Hb_000922_370 Hb_000922_370 Hb_000574_100--Hb_000922_370 Hb_001472_090 Hb_001472_090 Hb_000574_100--Hb_001472_090 Hb_000941_130 Hb_000941_130 Hb_000574_100--Hb_000941_130 Hb_000574_070 Hb_000574_070 Hb_000574_100--Hb_000574_070 Hb_000878_180 Hb_000878_180 Hb_000574_100--Hb_000878_180 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002235_300 Hb_002235_300 Hb_002615_090--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_002615_090--Hb_002253_080 Hb_002615_090--Hb_000878_180 Hb_001767_140 Hb_001767_140 Hb_002615_090--Hb_001767_140 Hb_003044_020 Hb_003044_020 Hb_000922_370--Hb_003044_020 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_002329_040 Hb_002329_040 Hb_000922_370--Hb_002329_040 Hb_003362_070 Hb_003362_070 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_004228_010 Hb_004228_010 Hb_001472_090--Hb_004228_010 Hb_001472_090--Hb_000574_070 Hb_000803_260 Hb_000803_260 Hb_001472_090--Hb_000803_260 Hb_014267_010 Hb_014267_010 Hb_001472_090--Hb_014267_010 Hb_000684_250 Hb_000684_250 Hb_001472_090--Hb_000684_250 Hb_000540_060 Hb_000540_060 Hb_001472_090--Hb_000540_060 Hb_002890_090 Hb_002890_090 Hb_000941_130--Hb_002890_090 Hb_004109_030 Hb_004109_030 Hb_000941_130--Hb_004109_030 Hb_002111_070 Hb_002111_070 Hb_000941_130--Hb_002111_070 Hb_009615_170 Hb_009615_170 Hb_000941_130--Hb_009615_170 Hb_157966_010 Hb_157966_010 Hb_000941_130--Hb_157966_010 Hb_003729_030 Hb_003729_030 Hb_000941_130--Hb_003729_030 Hb_003488_030 Hb_003488_030 Hb_000574_070--Hb_003488_030 Hb_001700_040 Hb_001700_040 Hb_000574_070--Hb_001700_040 Hb_000544_050 Hb_000544_050 Hb_000574_070--Hb_000544_050 Hb_001913_060 Hb_001913_060 Hb_000574_070--Hb_001913_060 Hb_010417_050 Hb_010417_050 Hb_000574_070--Hb_010417_050 Hb_002025_060 Hb_002025_060 Hb_000878_180--Hb_002025_060 Hb_000680_090 Hb_000680_090 Hb_000878_180--Hb_000680_090 Hb_000878_180--Hb_002235_300 Hb_000878_180--Hb_009615_170 Hb_000084_250 Hb_000084_250 Hb_000878_180--Hb_000084_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8378 73.42 24.7903 40.311 42.6177 79.2236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0746 23.3191 43.7902 32.9098 28.1851

CAGE analysis