Hb_000574_120

Information

Type -
Description -
Location Contig574: 94225-95437
Sequence    

Annotation

kegg
ID rcu:RCOM_0901940
description hypothetical protein
nr
ID XP_002517686.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVB7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0901940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49542: 95830-99837 , PASA_asmbl_49543: 95830-106122
cDNA
(Sanger)
(ID:Location)		 047_H19.ab1: 96002-99831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004324_290 0.0925710341 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
3 Hb_000316_150 0.1334231786 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_000072_330 0.1533959439 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004787_100 0.1652428579 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
6 Hb_013057_030 0.1706629101 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005725_190 0.1739181023 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
8 Hb_000975_330 0.1814503057 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
9 Hb_015978_030 0.1843509011 - - Zinc finger protein GIS2 [Medicago truncatula]
10 Hb_000307_110 0.1847978108 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
11 Hb_007218_140 0.1876900546 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
12 Hb_002217_270 0.1902465161 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
13 Hb_000275_070 0.1908666936 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
14 Hb_002301_200 0.1929192708 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
15 Hb_158123_010 0.1939093695 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_003053_060 0.1940828981 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
17 Hb_003086_050 0.1996318417 - - calcium-dependent protein kinase, putative [Ricinus communis]
18 Hb_006483_050 0.2003786396 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
19 Hb_005882_020 0.2010978017 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
20 Hb_002760_060 0.2020547552 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_120 Hb_000574_120 Hb_004324_290 Hb_004324_290 Hb_000574_120--Hb_004324_290 Hb_000316_150 Hb_000316_150 Hb_000574_120--Hb_000316_150 Hb_000072_330 Hb_000072_330 Hb_000574_120--Hb_000072_330 Hb_004787_100 Hb_004787_100 Hb_000574_120--Hb_004787_100 Hb_013057_030 Hb_013057_030 Hb_000574_120--Hb_013057_030 Hb_005725_190 Hb_005725_190 Hb_000574_120--Hb_005725_190 Hb_004324_290--Hb_000316_150 Hb_004324_290--Hb_004787_100 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_006483_050 Hb_006483_050 Hb_004324_290--Hb_006483_050 Hb_002217_270 Hb_002217_270 Hb_004324_290--Hb_002217_270 Hb_000316_150--Hb_006483_050 Hb_000210_150 Hb_000210_150 Hb_000316_150--Hb_000210_150 Hb_000316_150--Hb_158123_010 Hb_005882_020 Hb_005882_020 Hb_000316_150--Hb_005882_020 Hb_007218_140 Hb_007218_140 Hb_000072_330--Hb_007218_140 Hb_000975_330 Hb_000975_330 Hb_000072_330--Hb_000975_330 Hb_000072_330--Hb_004324_290 Hb_015978_030 Hb_015978_030 Hb_000072_330--Hb_015978_030 Hb_065500_040 Hb_065500_040 Hb_000072_330--Hb_065500_040 Hb_005568_060 Hb_005568_060 Hb_004787_100--Hb_005568_060 Hb_004787_100--Hb_002217_270 Hb_000532_030 Hb_000532_030 Hb_004787_100--Hb_000532_030 Hb_000103_400 Hb_000103_400 Hb_004787_100--Hb_000103_400 Hb_006538_030 Hb_006538_030 Hb_004787_100--Hb_006538_030 Hb_002217_440 Hb_002217_440 Hb_013057_030--Hb_002217_440 Hb_048653_040 Hb_048653_040 Hb_013057_030--Hb_048653_040 Hb_048653_020 Hb_048653_020 Hb_013057_030--Hb_048653_020 Hb_000172_300 Hb_000172_300 Hb_013057_030--Hb_000172_300 Hb_116349_050 Hb_116349_050 Hb_013057_030--Hb_116349_050 Hb_003086_050 Hb_003086_050 Hb_013057_030--Hb_003086_050 Hb_000275_070 Hb_000275_070 Hb_005725_190--Hb_000275_070 Hb_002760_060 Hb_002760_060 Hb_005725_190--Hb_002760_060 Hb_003442_050 Hb_003442_050 Hb_005725_190--Hb_003442_050 Hb_005725_190--Hb_013057_030 Hb_002301_200 Hb_002301_200 Hb_005725_190--Hb_002301_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153925 5.90549 0.604548 0.281417 0.0274671 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134749 0.476789 0.19168 0.192978 0.106357

CAGE analysis