Hb_000574_130

Information

Type -
Description -
Location Contig574: 95798-100068
Sequence    

Annotation

kegg
ID rcu:RCOM_0901930
description calcineurin B subunit, putative
nr
ID AFC88294.1
description calcineurin-like protein [Hevea brasiliensis]
swissprot
ID P42322
description Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1
trembl
ID J7F8W6
description Calcineurin-like protein OS=Hevea brasiliensis GN=CALC1 PE=2 SV=1
Gene Ontology
ID GO:0005773
description calcineurin subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49542: 95830-99837 , PASA_asmbl_49543: 95830-106122
cDNA
(Sanger)
(ID:Location)		 047_H19.ab1: 96002-99831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_130 0.0 - - calcineurin-like protein [Hevea brasiliensis]
2 Hb_000046_350 0.1001339042 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000685_050 0.1012631102 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
4 Hb_001252_210 0.102646912 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
5 Hb_000563_200 0.1072991381 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
6 Hb_148209_010 0.1077327793 - - RAS-related GTP-binding family protein [Populus trichocarpa]
7 Hb_003880_040 0.1089480355 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
8 Hb_001410_060 0.1102527237 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
9 Hb_003291_020 0.1105034682 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
10 Hb_001157_080 0.11342551 - - zinc finger protein, putative [Ricinus communis]
11 Hb_138585_040 0.1142963901 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
12 Hb_104265_040 0.114749907 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000302_280 0.1183314445 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
14 Hb_000072_180 0.1190025576 - - PREDICTED: EVI5-like protein [Jatropha curcas]
15 Hb_000016_170 0.1195209991 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004672_010 0.1196080246 - - ecotropic viral integration site, putative [Ricinus communis]
17 Hb_002284_230 0.1205586927 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
18 Hb_000922_040 0.1217021513 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
19 Hb_000049_050 0.1221005081 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
20 Hb_148113_010 0.1227062456 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]

Gene co-expression network

sample Hb_000574_130 Hb_000574_130 Hb_000046_350 Hb_000046_350 Hb_000574_130--Hb_000046_350 Hb_000685_050 Hb_000685_050 Hb_000574_130--Hb_000685_050 Hb_001252_210 Hb_001252_210 Hb_000574_130--Hb_001252_210 Hb_000563_200 Hb_000563_200 Hb_000574_130--Hb_000563_200 Hb_148209_010 Hb_148209_010 Hb_000574_130--Hb_148209_010 Hb_003880_040 Hb_003880_040 Hb_000574_130--Hb_003880_040 Hb_000072_180 Hb_000072_180 Hb_000046_350--Hb_000072_180 Hb_004672_010 Hb_004672_010 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_001284_030 Hb_001284_030 Hb_000046_350--Hb_001284_030 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_007054_010 Hb_007054_010 Hb_000685_050--Hb_007054_010 Hb_130719_010 Hb_130719_010 Hb_000685_050--Hb_130719_010 Hb_000685_050--Hb_000072_180 Hb_003291_020 Hb_003291_020 Hb_000685_050--Hb_003291_020 Hb_000685_050--Hb_006420_100 Hb_002284_230 Hb_002284_230 Hb_001252_210--Hb_002284_230 Hb_003894_080 Hb_003894_080 Hb_001252_210--Hb_003894_080 Hb_001252_210--Hb_000046_350 Hb_000733_080 Hb_000733_080 Hb_001252_210--Hb_000733_080 Hb_019762_020 Hb_019762_020 Hb_001252_210--Hb_019762_020 Hb_001410_060 Hb_001410_060 Hb_000563_200--Hb_001410_060 Hb_145880_020 Hb_145880_020 Hb_000563_200--Hb_145880_020 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_000563_200--Hb_003880_040 Hb_148209_010--Hb_003291_020 Hb_002303_060 Hb_002303_060 Hb_148209_010--Hb_002303_060 Hb_148209_010--Hb_001123_160 Hb_000922_040 Hb_000922_040 Hb_148209_010--Hb_000922_040 Hb_000384_120 Hb_000384_120 Hb_148209_010--Hb_000384_120 Hb_003880_040--Hb_001410_060 Hb_000016_170 Hb_000016_170 Hb_003880_040--Hb_000016_170 Hb_003880_040--Hb_003291_020 Hb_005307_050 Hb_005307_050 Hb_003880_040--Hb_005307_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06315 3.18333 1.98788 17.4253 3.054 6.62685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9705 22.0947 14.8274 12.3368 7.61454

CAGE analysis