Hb_000574_140

Information

Type -
Description -
Location Contig574: 100253-108393
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49543: 95830-106122 , PASA_asmbl_49547: 103185-110046 , PASA_asmbl_49548: 102985-103163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_140 0.0 - - -
2 Hb_004241_030 0.1970403988 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004687_010 0.2199599272 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_011280_020 0.2330994047 - - polyprotein [Oryza australiensis]
5 Hb_000505_120 0.2609143307 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_006103_040 0.2628112124 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001241_050 0.2733614057 - - PREDICTED: uncharacterized protein LOC104880586 isoform X1 [Vitis vinifera]
8 Hb_000346_080 0.2756176593 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
9 Hb_002154_080 0.2972588459 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
10 Hb_008783_010 0.2986691953 - - -
11 Hb_083663_010 0.2993089249 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_008727_070 0.3022303059 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
13 Hb_005401_010 0.3100688056 - - -
14 Hb_001863_410 0.3162569566 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_001769_130 0.3217954136 - - -
16 Hb_003413_010 0.3336856421 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_015076_020 0.3371946002 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
18 Hb_027337_050 0.3395603241 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_117001_010 0.3408457916 - - -
20 Hb_002835_060 0.3418260497 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_140 Hb_000574_140 Hb_004241_030 Hb_004241_030 Hb_000574_140--Hb_004241_030 Hb_004687_010 Hb_004687_010 Hb_000574_140--Hb_004687_010 Hb_011280_020 Hb_011280_020 Hb_000574_140--Hb_011280_020 Hb_000505_120 Hb_000505_120 Hb_000574_140--Hb_000505_120 Hb_006103_040 Hb_006103_040 Hb_000574_140--Hb_006103_040 Hb_001241_050 Hb_001241_050 Hb_000574_140--Hb_001241_050 Hb_015076_020 Hb_015076_020 Hb_004241_030--Hb_015076_020 Hb_004241_030--Hb_000505_120 Hb_004241_030--Hb_004687_010 Hb_004241_030--Hb_011280_020 Hb_008783_010 Hb_008783_010 Hb_004241_030--Hb_008783_010 Hb_004687_010--Hb_001241_050 Hb_004687_010--Hb_006103_040 Hb_004687_010--Hb_008783_010 Hb_105581_010 Hb_105581_010 Hb_004687_010--Hb_105581_010 Hb_011280_020--Hb_000505_120 Hb_011280_020--Hb_008783_010 Hb_011280_020--Hb_015076_020 Hb_003413_010 Hb_003413_010 Hb_011280_020--Hb_003413_010 Hb_083663_010 Hb_083663_010 Hb_011280_020--Hb_083663_010 Hb_000505_120--Hb_008783_010 Hb_000505_120--Hb_015076_020 Hb_000505_120--Hb_003413_010 Hb_097006_010 Hb_097006_010 Hb_000505_120--Hb_097006_010 Hb_001310_100 Hb_001310_100 Hb_006103_040--Hb_001310_100 Hb_133047_030 Hb_133047_030 Hb_006103_040--Hb_133047_030 Hb_071160_010 Hb_071160_010 Hb_006103_040--Hb_071160_010 Hb_132317_010 Hb_132317_010 Hb_006103_040--Hb_132317_010 Hb_001241_050--Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_001241_050--Hb_010164_040 Hb_000612_050 Hb_000612_050 Hb_001241_050--Hb_000612_050 Hb_001241_050--Hb_006103_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0485414 0.136377 0 0 0.0360462 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0285059 0.13694

CAGE analysis