Hb_000574_150

Information

Type -
Description -
Location Contig574: 101254-103179
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02450g
description hypothetical protein
nr
ID XP_012073125.1
description PREDICTED: protein SRG1-like [Jatropha curcas]
swissprot
ID D4N502
description Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1
trembl
ID A0A067KXP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06101 PE=3 SV=1
Gene Ontology
ID GO:0008168
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49545: 101404-102935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_150 0.0 - - PREDICTED: protein SRG1-like [Jatropha curcas]
2 Hb_007978_020 0.1948238832 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
3 Hb_181975_010 0.1983235135 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
4 Hb_001396_170 0.2097524703 - - unnamed protein product [Vitis vinifera]
5 Hb_000003_390 0.2168258795 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
6 Hb_007257_050 0.2286013085 - - protein with unknown function [Ricinus communis]
7 Hb_007680_020 0.2360468335 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_000617_040 0.2387704218 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
9 Hb_001195_150 0.2602812525 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
10 Hb_001907_100 0.2614460671 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
11 Hb_001493_010 0.2679339872 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
12 Hb_006615_100 0.2700617207 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
13 Hb_080147_080 0.2731880936 - - peroxiredoxin, putative [Ricinus communis]
14 Hb_006420_020 0.2743335033 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
15 Hb_062585_010 0.2762491746 - - hypothetical protein JCGZ_19532 [Jatropha curcas]
16 Hb_000878_100 0.2774388942 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
17 Hb_002737_020 0.2784112897 - - metallothionein [Bruguiera gymnorhiza]
18 Hb_031089_030 0.2790110309 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
19 Hb_002783_050 0.2791155957 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000123_030 0.2804736569 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_000574_150 Hb_000574_150 Hb_007978_020 Hb_007978_020 Hb_000574_150--Hb_007978_020 Hb_181975_010 Hb_181975_010 Hb_000574_150--Hb_181975_010 Hb_001396_170 Hb_001396_170 Hb_000574_150--Hb_001396_170 Hb_000003_390 Hb_000003_390 Hb_000574_150--Hb_000003_390 Hb_007257_050 Hb_007257_050 Hb_000574_150--Hb_007257_050 Hb_007680_020 Hb_007680_020 Hb_000574_150--Hb_007680_020 Hb_007978_020--Hb_181975_010 Hb_041237_010 Hb_041237_010 Hb_007978_020--Hb_041237_010 Hb_000014_130 Hb_000014_130 Hb_007978_020--Hb_000014_130 Hb_000617_040 Hb_000617_040 Hb_007978_020--Hb_000617_040 Hb_003398_010 Hb_003398_010 Hb_007978_020--Hb_003398_010 Hb_181975_010--Hb_007257_050 Hb_001907_100 Hb_001907_100 Hb_181975_010--Hb_001907_100 Hb_181975_010--Hb_000003_390 Hb_031089_030 Hb_031089_030 Hb_181975_010--Hb_031089_030 Hb_001493_010 Hb_001493_010 Hb_181975_010--Hb_001493_010 Hb_062585_010 Hb_062585_010 Hb_001396_170--Hb_062585_010 Hb_001396_170--Hb_181975_010 Hb_001396_170--Hb_007978_020 Hb_023647_040 Hb_023647_040 Hb_001396_170--Hb_023647_040 Hb_001396_170--Hb_000003_390 Hb_000003_390--Hb_007257_050 Hb_003157_010 Hb_003157_010 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000375_370 Hb_000375_370 Hb_000003_390--Hb_000375_370 Hb_009028_030 Hb_009028_030 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_007257_050--Hb_003157_010 Hb_006615_100 Hb_006615_100 Hb_007680_020--Hb_006615_100 Hb_005122_060 Hb_005122_060 Hb_007680_020--Hb_005122_060 Hb_001195_150 Hb_001195_150 Hb_007680_020--Hb_001195_150 Hb_000307_250 Hb_000307_250 Hb_007680_020--Hb_000307_250 Hb_007680_020--Hb_007257_050 Hb_000281_010 Hb_000281_010 Hb_007680_020--Hb_000281_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
215.313 246.338 2.88303 34.7269 66.4392 147.783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10552 8.14567 1.00348 13.3624 32.7858

CAGE analysis