Hb_000574_160

Information

Type -
Description -
Location Contig574: 110033-111157
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20830g
description hypothetical protein
nr
ID XP_012073124.1
description PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q9LMR3
description Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1
trembl
ID A0A067KLB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06102 PE=4 SV=1
Gene Ontology
ID GO:0009507
description arogenate dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49547: 103185-110046 , PASA_asmbl_49549: 111828-118151
cDNA
(Sanger)
(ID:Location)		 041_N03.ab1: 111945-112438

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_160 0.0 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
2 Hb_000906_040 0.0729769238 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
3 Hb_002235_350 0.0752600715 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
4 Hb_002259_070 0.077745402 - - taz protein, putative [Ricinus communis]
5 Hb_019253_030 0.0814377601 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
6 Hb_000029_200 0.0818512969 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
7 Hb_001780_040 0.0886363961 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
8 Hb_005511_160 0.093553773 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
9 Hb_000438_220 0.0944829268 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
10 Hb_000127_180 0.0959090348 - - 40S ribosomal protein S18, putative [Ricinus communis]
11 Hb_002768_030 0.1001883165 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
12 Hb_003641_020 0.1003440659 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
13 Hb_003683_110 0.1026427001 - - JHL10I11.3 [Jatropha curcas]
14 Hb_000265_050 0.1029416412 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
15 Hb_000699_090 0.1046835968 - - cyclophilin, putative [Ricinus communis]
16 Hb_003893_050 0.1056340554 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
17 Hb_000510_110 0.1073338279 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
18 Hb_012368_020 0.107666718 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
19 Hb_001047_230 0.1085380638 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_012573_070 0.1090325693 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000574_160 Hb_000574_160 Hb_000906_040 Hb_000906_040 Hb_000574_160--Hb_000906_040 Hb_002235_350 Hb_002235_350 Hb_000574_160--Hb_002235_350 Hb_002259_070 Hb_002259_070 Hb_000574_160--Hb_002259_070 Hb_019253_030 Hb_019253_030 Hb_000574_160--Hb_019253_030 Hb_000029_200 Hb_000029_200 Hb_000574_160--Hb_000029_200 Hb_001780_040 Hb_001780_040 Hb_000574_160--Hb_001780_040 Hb_000975_320 Hb_000975_320 Hb_000906_040--Hb_000975_320 Hb_000906_040--Hb_002235_350 Hb_000906_040--Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_000906_040--Hb_002768_030 Hb_012368_020 Hb_012368_020 Hb_000906_040--Hb_012368_020 Hb_002235_350--Hb_001780_040 Hb_003540_240 Hb_003540_240 Hb_002235_350--Hb_003540_240 Hb_001979_040 Hb_001979_040 Hb_002235_350--Hb_001979_040 Hb_001484_070 Hb_001484_070 Hb_002235_350--Hb_001484_070 Hb_002259_070--Hb_019253_030 Hb_005511_160 Hb_005511_160 Hb_002259_070--Hb_005511_160 Hb_012753_230 Hb_012753_230 Hb_002259_070--Hb_012753_230 Hb_002259_070--Hb_001780_040 Hb_010261_060 Hb_010261_060 Hb_002259_070--Hb_010261_060 Hb_143766_050 Hb_143766_050 Hb_019253_030--Hb_143766_050 Hb_019253_030--Hb_010261_060 Hb_009686_030 Hb_009686_030 Hb_019253_030--Hb_009686_030 Hb_001540_010 Hb_001540_010 Hb_019253_030--Hb_001540_010 Hb_002864_050 Hb_002864_050 Hb_000029_200--Hb_002864_050 Hb_000510_110 Hb_000510_110 Hb_000029_200--Hb_000510_110 Hb_003893_050 Hb_003893_050 Hb_000029_200--Hb_003893_050 Hb_001314_100 Hb_001314_100 Hb_000029_200--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_000029_200--Hb_012573_070 Hb_007416_030 Hb_007416_030 Hb_000029_200--Hb_007416_030 Hb_001780_040--Hb_002768_030 Hb_003683_110 Hb_003683_110 Hb_001780_040--Hb_003683_110 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_003226_100 Hb_003226_100 Hb_001780_040--Hb_003226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9217 14.1174 14.8736 11.5104 18.6523 28.5309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.7556 90.5736 29.413 10.763 19.1293

CAGE analysis