Hb_000574_230

Information

Type -
Description -
Location Contig574: 201844-216347
Sequence    

Annotation

kegg
ID vvi:100242173
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID XP_010655050.1
description PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID F6HXH2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g07610 PE=4 SV=1
Gene Ontology
ID GO:0016301
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49553: 210999-214726 , PASA_asmbl_49554: 215114-215381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_230 0.0 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
2 Hb_007257_070 0.0585491282 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
3 Hb_001269_240 0.0723734816 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
4 Hb_026050_010 0.0860052102 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_002725_080 0.0949357462 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_024650_010 0.1083306567 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
7 Hb_007221_040 0.1090885611 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
8 Hb_005074_010 0.1102320738 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
9 Hb_028928_020 0.1110843839 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
10 Hb_000434_060 0.1122608524 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
11 Hb_007441_360 0.1132505659 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
12 Hb_009557_080 0.117961291 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
13 Hb_010174_200 0.1194505204 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
14 Hb_009771_040 0.1226174402 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
15 Hb_003581_050 0.1246448521 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
16 Hb_003071_050 0.1256208922 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
17 Hb_002250_140 0.1276307588 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
18 Hb_006736_040 0.1324476973 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
19 Hb_033187_020 0.1333751604 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
20 Hb_000140_220 0.1339140422 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_230 Hb_000574_230 Hb_007257_070 Hb_007257_070 Hb_000574_230--Hb_007257_070 Hb_001269_240 Hb_001269_240 Hb_000574_230--Hb_001269_240 Hb_026050_010 Hb_026050_010 Hb_000574_230--Hb_026050_010 Hb_002725_080 Hb_002725_080 Hb_000574_230--Hb_002725_080 Hb_024650_010 Hb_024650_010 Hb_000574_230--Hb_024650_010 Hb_007221_040 Hb_007221_040 Hb_000574_230--Hb_007221_040 Hb_007257_070--Hb_001269_240 Hb_007257_070--Hb_026050_010 Hb_005074_010 Hb_005074_010 Hb_007257_070--Hb_005074_010 Hb_028928_020 Hb_028928_020 Hb_007257_070--Hb_028928_020 Hb_003071_050 Hb_003071_050 Hb_007257_070--Hb_003071_050 Hb_001269_240--Hb_026050_010 Hb_009557_080 Hb_009557_080 Hb_001269_240--Hb_009557_080 Hb_007441_360 Hb_007441_360 Hb_001269_240--Hb_007441_360 Hb_001269_240--Hb_005074_010 Hb_009771_040 Hb_009771_040 Hb_026050_010--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_026050_010--Hb_002250_140 Hb_010174_200 Hb_010174_200 Hb_026050_010--Hb_010174_200 Hb_000258_230 Hb_000258_230 Hb_026050_010--Hb_000258_230 Hb_004724_300 Hb_004724_300 Hb_002725_080--Hb_004724_300 Hb_002725_080--Hb_024650_010 Hb_010417_110 Hb_010417_110 Hb_002725_080--Hb_010417_110 Hb_002725_080--Hb_009557_080 Hb_006002_020 Hb_006002_020 Hb_002725_080--Hb_006002_020 Hb_006736_040 Hb_006736_040 Hb_024650_010--Hb_006736_040 Hb_003435_040 Hb_003435_040 Hb_024650_010--Hb_003435_040 Hb_001518_030 Hb_001518_030 Hb_024650_010--Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_024650_010--Hb_026048_030 Hb_000028_330 Hb_000028_330 Hb_024650_010--Hb_000028_330 Hb_004228_070 Hb_004228_070 Hb_007221_040--Hb_004228_070 Hb_002205_150 Hb_002205_150 Hb_007221_040--Hb_002205_150 Hb_021576_130 Hb_021576_130 Hb_007221_040--Hb_021576_130 Hb_003454_050 Hb_003454_050 Hb_007221_040--Hb_003454_050 Hb_000434_060 Hb_000434_060 Hb_007221_040--Hb_000434_060 Hb_012539_100 Hb_012539_100 Hb_007221_040--Hb_012539_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.18238 0.125839 0.192394 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0179588 0.135885

CAGE analysis