Hb_000574_250

Information

Type -
Description -
Location Contig574: 229455-242298
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_012073431.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A067KYW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06105 PE=4 SV=1
Gene Ontology
ID GO:0016020
description leucine-rich receptor-like kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_250 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
2 Hb_033594_100 0.154641194 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_005288_060 0.1557412944 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
4 Hb_000453_240 0.1693223165 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
5 Hb_060658_010 0.1812217448 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_001040_150 0.1813891964 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006700_040 0.1843011755 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
8 Hb_002874_030 0.1931755965 - - hypothetical protein JCGZ_07001 [Jatropha curcas]
9 Hb_000009_440 0.1975160592 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
10 Hb_000656_200 0.2024433811 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
11 Hb_178968_080 0.2025992908 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
12 Hb_000138_020 0.2110748806 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
13 Hb_002518_180 0.2147323469 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
14 Hb_000318_400 0.2150146386 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000625_030 0.2156724537 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
16 Hb_006594_080 0.216896718 - - beta-glucosidase, putative [Ricinus communis]
17 Hb_010068_050 0.216947691 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
18 Hb_000046_610 0.2187759379 - - PREDICTED: putative cullin-like protein 2 isoform X3 [Populus euphratica]
19 Hb_007130_010 0.2198110949 - - -
20 Hb_000181_020 0.2198456066 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000574_250 Hb_000574_250 Hb_033594_100 Hb_033594_100 Hb_000574_250--Hb_033594_100 Hb_005288_060 Hb_005288_060 Hb_000574_250--Hb_005288_060 Hb_000453_240 Hb_000453_240 Hb_000574_250--Hb_000453_240 Hb_060658_010 Hb_060658_010 Hb_000574_250--Hb_060658_010 Hb_001040_150 Hb_001040_150 Hb_000574_250--Hb_001040_150 Hb_006700_040 Hb_006700_040 Hb_000574_250--Hb_006700_040 Hb_002518_180 Hb_002518_180 Hb_033594_100--Hb_002518_180 Hb_011853_010 Hb_011853_010 Hb_033594_100--Hb_011853_010 Hb_033594_100--Hb_001040_150 Hb_001677_230 Hb_001677_230 Hb_033594_100--Hb_001677_230 Hb_101449_010 Hb_101449_010 Hb_033594_100--Hb_101449_010 Hb_082683_010 Hb_082683_010 Hb_033594_100--Hb_082683_010 Hb_006594_080 Hb_006594_080 Hb_005288_060--Hb_006594_080 Hb_000313_230 Hb_000313_230 Hb_005288_060--Hb_000313_230 Hb_000414_180 Hb_000414_180 Hb_005288_060--Hb_000414_180 Hb_010068_050 Hb_010068_050 Hb_005288_060--Hb_010068_050 Hb_002874_030 Hb_002874_030 Hb_005288_060--Hb_002874_030 Hb_028872_150 Hb_028872_150 Hb_000453_240--Hb_028872_150 Hb_000453_240--Hb_001040_150 Hb_001123_010 Hb_001123_010 Hb_000453_240--Hb_001123_010 Hb_152868_030 Hb_152868_030 Hb_000453_240--Hb_152868_030 Hb_000453_240--Hb_006700_040 Hb_002311_260 Hb_002311_260 Hb_060658_010--Hb_002311_260 Hb_060658_010--Hb_000414_180 Hb_000454_160 Hb_000454_160 Hb_060658_010--Hb_000454_160 Hb_003938_110 Hb_003938_110 Hb_060658_010--Hb_003938_110 Hb_069147_010 Hb_069147_010 Hb_060658_010--Hb_069147_010 Hb_006185_030 Hb_006185_030 Hb_001040_150--Hb_006185_030 Hb_009803_020 Hb_009803_020 Hb_001040_150--Hb_009803_020 Hb_098533_010 Hb_098533_010 Hb_001040_150--Hb_098533_010 Hb_007229_050 Hb_007229_050 Hb_001040_150--Hb_007229_050 Hb_178968_080 Hb_178968_080 Hb_001040_150--Hb_178968_080 Hb_000625_030 Hb_000625_030 Hb_001040_150--Hb_000625_030 Hb_006700_040--Hb_011853_010 Hb_006700_040--Hb_001040_150 Hb_006700_040--Hb_033594_100 Hb_126398_020 Hb_126398_020 Hb_006700_040--Hb_126398_020 Hb_006700_040--Hb_152868_030 Hb_000656_200 Hb_000656_200 Hb_006700_040--Hb_000656_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.019673 0.189129 0.208783 0.353597 0 0.0168473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.192909 0.0542166 0.0622765 1.23398 1.06514

CAGE analysis