Hb_000574_270

Information

Type -
Description -
Location Contig574: 271801-272421
Sequence    

Annotation

kegg
ID tcc:TCM_027281
description VQ motif-containing protein, putative
nr
ID XP_012073131.1
description PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
swissprot
ID Q9M8L3
description VQ motif-containing protein 11 OS=Arabidopsis thaliana GN=VQ11 PE=1 SV=1
trembl
ID A0A067KXP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06106 PE=4 SV=1
Gene Ontology
ID GO:0044424
description vq motif-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49555: 272039-272399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_270 0.0 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
2 Hb_000365_110 0.0659134362 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
3 Hb_000953_180 0.0711156581 - - -
4 Hb_000483_050 0.0966459725 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
5 Hb_150745_010 0.1150906573 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
6 Hb_000192_030 0.1196728763 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
7 Hb_000413_220 0.1236647384 - - PREDICTED: kinesin-1 [Jatropha curcas]
8 Hb_100395_010 0.1259818309 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000340_070 0.1273712314 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
10 Hb_007101_250 0.1298069596 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
11 Hb_000574_180 0.1326946726 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
12 Hb_000668_190 0.1330279906 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
13 Hb_002435_010 0.1341827283 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
14 Hb_008115_030 0.1386513783 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
15 Hb_008948_070 0.1401048597 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
16 Hb_071654_010 0.142817333 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
17 Hb_012146_010 0.1455927863 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
18 Hb_127372_010 0.1471892451 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
19 Hb_007894_040 0.1481537763 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
20 Hb_055877_010 0.1492963186 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_270 Hb_000574_270 Hb_000365_110 Hb_000365_110 Hb_000574_270--Hb_000365_110 Hb_000953_180 Hb_000953_180 Hb_000574_270--Hb_000953_180 Hb_000483_050 Hb_000483_050 Hb_000574_270--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000574_270--Hb_150745_010 Hb_000192_030 Hb_000192_030 Hb_000574_270--Hb_000192_030 Hb_000413_220 Hb_000413_220 Hb_000574_270--Hb_000413_220 Hb_000365_110--Hb_000953_180 Hb_000365_110--Hb_000483_050 Hb_100395_010 Hb_100395_010 Hb_000365_110--Hb_100395_010 Hb_000365_110--Hb_000192_030 Hb_008948_070 Hb_008948_070 Hb_000365_110--Hb_008948_070 Hb_000953_180--Hb_000192_030 Hb_000953_180--Hb_100395_010 Hb_000953_180--Hb_008948_070 Hb_000953_180--Hb_000483_050 Hb_001971_030 Hb_001971_030 Hb_000483_050--Hb_001971_030 Hb_000656_120 Hb_000656_120 Hb_000483_050--Hb_000656_120 Hb_000483_050--Hb_150745_010 Hb_001754_100 Hb_001754_100 Hb_150745_010--Hb_001754_100 Hb_150745_010--Hb_000413_220 Hb_000574_180 Hb_000574_180 Hb_150745_010--Hb_000574_180 Hb_000397_170 Hb_000397_170 Hb_150745_010--Hb_000397_170 Hb_000192_030--Hb_100395_010 Hb_010223_010 Hb_010223_010 Hb_000192_030--Hb_010223_010 Hb_000192_030--Hb_008948_070 Hb_107174_010 Hb_107174_010 Hb_000192_030--Hb_107174_010 Hb_000413_220--Hb_000574_180 Hb_000668_190 Hb_000668_190 Hb_000413_220--Hb_000668_190 Hb_000256_170 Hb_000256_170 Hb_000413_220--Hb_000256_170 Hb_000739_250 Hb_000739_250 Hb_000413_220--Hb_000739_250 Hb_000413_220--Hb_001754_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.449444 1.48689 0.319739 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0926231 0

CAGE analysis