Hb_000574_280

Information

Type -
Description -
Location Contig574: 276192-284373
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28780g
description hypothetical protein
nr
ID XP_006382140.1
description hypothetical protein POPTR_0006s28780g [Populus trichocarpa]
swissprot
ID C0LGP9
description Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1
trembl
ID B9N676
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28780g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_280 0.0 - - hypothetical protein POPTR_0006s28780g [Populus trichocarpa]
2 Hb_000023_160 0.2234096676 - - PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
3 Hb_009393_190 0.2433704408 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
4 Hb_000157_080 0.2451498257 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
5 Hb_002232_470 0.2642410685 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000108_100 0.2720880102 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
7 Hb_003925_030 0.2754155716 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009615_020 0.2817347738 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
9 Hb_006816_270 0.2832313759 - - conserved hypothetical protein [Ricinus communis]
10 Hb_116420_010 0.2878128548 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
11 Hb_004800_060 0.2923884895 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
12 Hb_000011_570 0.2941709603 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
13 Hb_002217_470 0.2950462164 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
14 Hb_000352_290 0.2962520119 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
15 Hb_001019_080 0.3040163605 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
16 Hb_000015_030 0.3046929337 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
17 Hb_000205_110 0.305129046 - - PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X2 [Populus euphratica]
18 Hb_146868_010 0.3052286719 - - -
19 Hb_001571_090 0.3058180153 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
20 Hb_001789_050 0.3066528 - - 60S ribosomal protein L36-2 [Morus notabilis]

Gene co-expression network

sample Hb_000574_280 Hb_000574_280 Hb_000023_160 Hb_000023_160 Hb_000574_280--Hb_000023_160 Hb_009393_190 Hb_009393_190 Hb_000574_280--Hb_009393_190 Hb_000157_080 Hb_000157_080 Hb_000574_280--Hb_000157_080 Hb_002232_470 Hb_002232_470 Hb_000574_280--Hb_002232_470 Hb_000108_100 Hb_000108_100 Hb_000574_280--Hb_000108_100 Hb_003925_030 Hb_003925_030 Hb_000574_280--Hb_003925_030 Hb_002217_470 Hb_002217_470 Hb_000023_160--Hb_002217_470 Hb_000317_160 Hb_000317_160 Hb_000023_160--Hb_000317_160 Hb_009615_020 Hb_009615_020 Hb_000023_160--Hb_009615_020 Hb_002685_150 Hb_002685_150 Hb_000023_160--Hb_002685_150 Hb_000654_030 Hb_000654_030 Hb_000023_160--Hb_000654_030 Hb_001140_070 Hb_001140_070 Hb_000023_160--Hb_001140_070 Hb_009393_190--Hb_000157_080 Hb_009393_190--Hb_009615_020 Hb_100743_010 Hb_100743_010 Hb_009393_190--Hb_100743_010 Hb_001437_090 Hb_001437_090 Hb_009393_190--Hb_001437_090 Hb_000959_310 Hb_000959_310 Hb_009393_190--Hb_000959_310 Hb_150766_020 Hb_150766_020 Hb_000157_080--Hb_150766_020 Hb_000994_110 Hb_000994_110 Hb_000157_080--Hb_000994_110 Hb_179812_010 Hb_179812_010 Hb_000157_080--Hb_179812_010 Hb_000243_040 Hb_000243_040 Hb_000157_080--Hb_000243_040 Hb_000136_180 Hb_000136_180 Hb_000157_080--Hb_000136_180 Hb_003226_220 Hb_003226_220 Hb_002232_470--Hb_003226_220 Hb_001575_030 Hb_001575_030 Hb_002232_470--Hb_001575_030 Hb_000212_470 Hb_000212_470 Hb_002232_470--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_002232_470--Hb_001571_090 Hb_001610_130 Hb_001610_130 Hb_002232_470--Hb_001610_130 Hb_005463_060 Hb_005463_060 Hb_002232_470--Hb_005463_060 Hb_000326_070 Hb_000326_070 Hb_000108_100--Hb_000326_070 Hb_000442_090 Hb_000442_090 Hb_000108_100--Hb_000442_090 Hb_019516_020 Hb_019516_020 Hb_000108_100--Hb_019516_020 Hb_116420_030 Hb_116420_030 Hb_000108_100--Hb_116420_030 Hb_000108_100--Hb_009393_190 Hb_000092_130 Hb_000092_130 Hb_000108_100--Hb_000092_130 Hb_131967_010 Hb_131967_010 Hb_003925_030--Hb_131967_010 Hb_006769_010 Hb_006769_010 Hb_003925_030--Hb_006769_010 Hb_003925_030--Hb_000023_160 Hb_000029_100 Hb_000029_100 Hb_003925_030--Hb_000029_100 Hb_002148_020 Hb_002148_020 Hb_003925_030--Hb_002148_020 Hb_000415_070 Hb_000415_070 Hb_003925_030--Hb_000415_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0083869 0 0.0103008 0.0148476 0.0131264 0.0126144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0153722 0.0362898 0 0.0335959 0

CAGE analysis